Detailed information on CNT3099563


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT000447, E-value = 5e-114

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30690675Oryza rufipogonOryza sativa45.7184.9197.46197forward
CNT30109765Oryza rufipogonOryza longistaminata48.2656.3797.12208forward
CNT30574594Oryza rufipogonOryza barthii25.0624.1699.07108forward
CNT30115617Oryza rufipogonOryza nivara60.0961.5297.68259forward

Expression of CNT3099563

Peptides detected in this lncRNA

>peptide 1 (30 aa)
MSRQCHQLAPVSMVTLSPWYQHHDVVQSYRQ

>peptide 2 (36 aa)
KAGSRPCRWSSHIIHAIFDRFCNSWRHQILHTFLRF*

>peptide 3 (45 aa)
MPTSGSIITGGAPTLPGSILAGDVTPMPPASSCLNGNSFSMVSAP*

>peptide 4 (77 aa)
PRPAAGPADGAATSSMPSLTGSAIPGGTKFSIPFSGSEIPPGATSSMPLPGSAVPKGITSMSSSGSLIVGDATSSMP*

Sequence

>CNT3099563
CCAAGGCCGGCAGCAGGCCCTGCAGATGGAGCAGCCACATCATCCATGCCATCTTTGACAGGTTCTGCAATTCCTGGAGGCACCAAATTCTCCATACCTT
TCTCAGGTTCTGAAATTCCTCCAGGTGCCACCTCCTCCATGCCTTTGCCAGGTTCTGCAGTTCCTAAAGGCATCACCTCAATGTCTTCATCAGGTTCTTT
GATTGTTGGAGATGCCACCTCCTCCATGCCTTGATCGGGTTCTACAATTTTTGGAGGTGCCACATCCTCCATGCCTACATCAGGTTCAATAATTACTGGA
GGTGCCCCCACATTACCAGGTTCTATACTTGCTGGAGATGTCACGCCAATGCCACCAGCTAGCTCCTGTCTCAATGGTAACTCTTTCTCCATGGTATCAG
CACCATGATGTGGTTCAGAGTTATCGACAAG