Detailed information on CNT3099541


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONOSAT000774, E-value = 2e-148

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30574763Oryza rufipogonOryza barthii91.9967.5997.54609forward

Expression of CNT3099541

Peptides detected in this lncRNA

>peptide 1 (77 aa)
MHGFVREIGKKIGGACCWLQQQNNNHVFPPLDSENSEYVEQDSEVECVSTQQQGEDSGYELCFLCGHCSAEGGEGNE*

>peptide 2 (89 aa)
FIFFLFSFSLACSFLSCKLSSQFTSFHQISSKHLRSIPACHTTAISSIQASHPSKYLAHAWVREGDREENRWSLLLVAATKQQPCFSST*

>peptide 3 (33 aa)
MCCMLGSWTLLCVMYLLHFNPIMVLAMFINCLR*

>peptide 4 (65 aa)
MFFLHLIRRIRSMWSKTLRLSVFPRSSKERIPVMSYASCVVIALLRVARAMSDLLQLGSCPVGLP*

>peptide 5 (63 aa)
FHLLPFFFLPCLFFSFLQAELPVHFFPSNLLQTLEIHPCMSHHSNLKYPSLPSIQISCTCMGS*

Sequence

>CNT3099541
CTTTCATCTTCTTCCTTTTTTCTTTCTCCCTTGCTTGTTCTTTTCTTTCTTGCAAGCTGAGCTCCCAGTTCACTTCTTTCCATCAAATCTCCTCCAAACA
CTTGAGATCCATCCCTGCATGTCACACCACAGCAATCTCAAGTATCCAAGCCTCCCATCCATCCAAATATCTTGCACATGCATGGGTTCGTGAGGGAGAT
CGGGAAGAAAATAGGTGGAGCTTGCTGCTGGTTGCAGCAACAAAACAACAACCATGTTTTTCCTCCACTTGATTCGGAGAATTCGGAGTATGTGGAGCAA
GACTCTGAGGTTGAGTGTGTTTCCACGCAGCAGCAAGGAGAGGATTCCGGTTATGAGTTATGCTTCTTGTGTGGTCATTGCTCTGCTGAGGGTGGCGAGG
GCAATGAGTGATCTCTTGCAGCTTGGCTCTTGCCCGGTTGGTTTGCCCTAGTGGGGTTGTGGCACCACCGATTTTATCTTTTGCCTATGAACTCTAATTG
AGACTTCTGCTGCTATATTTATGTGTTGTATGTTGGGATCTTGGACCCTATTATGTGTCATGTACCTGCTGCACTTTAACCCTATTATGGTACTTGCTAT
GTTTATTAATTGCTTGCGATGAAAGTGTGAGGCTAGTCGCATTCCTACGGACTAGCTAAGCA