Detailed information on CNT3099525


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30690702Oryza rufipogonOryza sativa10010099.58240forward
CNT30728922Oryza rufipogonCorchorus capsularis22.0819.5690.5753forward
CNT30552070Oryza rufipogonOryza glaberrima100100.4298.33240forward
CNT3066610Oryza rufipogonLeersia perrieri100.4299.5992.53241forward
CNT30595512Oryza rufipogonOryza meridionalis98.7599.1696.2237forward
CNT30369412Oryza rufipogonOryza glumipatula100.8310097.93242forward
CNT30107154Oryza rufipogonOryza longistaminata100100.4298.33240forward
CNT30574848Oryza rufipogonOryza barthii100100.4298.33240forward
CNT30115824Oryza rufipogonOryza nivara100100.4298.33240forward
CNT30603505Oryza rufipogonOryza punctata98.7599.1693.67237forward
CNT30551841Oryza rufipogonOryza brachyantha100.4297.1886.31241forward

Expression of CNT3099525

Peptides detected in this lncRNA

>peptide 1 (64 aa)
STRRSERALCSPGKSPGPQPQRCGRGDAESLSARALLFARGQRHVWSPLGASRDHNWPITQLFT*

>peptide 2 (33 aa)
MRPRRRGKSQRSRPPLREGAETRVEPFGREPRS*

>peptide 3 (70 aa)
RAQDEVSGLFVALESPRALNRRDAAAETRKVSALAPSSSRGGRDTCGALWARAEIIIGQLHSYSLDPSPD*

Sequence

>CNT3099525
CGAGCACAAGACGAAGTGAGCGGGCTCTTTGTAGCCCTGGAAAGTCCCCGGGCCCTCAACCGCAGAGATGCGGCCGCGGAGACGCGGAAAGTCTCAGCGC
TCGCGCCCTCCTCTTCGCGAGGGGGCAGAGACACGTGTGGAGCCCTTTGGGCGCGAGCCGAGATCATAATTGGCCAATTACACAGTTATTCACTTGATCC
ATCTCCGGATTAACAGAACGGGGCTTACGATTGTGTGCAA