Detailed information on CNT3099524


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30690487Oryza rufipogonOryza sativa17.3736.54100323forward
CNT30552106Oryza rufipogonOryza glaberrima15.626.7589.31290forward
CNT30369295Oryza rufipogonOryza glumipatula49.3380.5898.8917forward
CNT30115639Oryza rufipogonOryza nivara17.3727.7794.74323forward

Expression of CNT3099524

Peptides detected in this lncRNA

>peptide 1 (91 aa)
ELSFWLQTVRNPLSSLSCHEPFAVAGDPTDSRPPLLPRRCLFLALRRQRALPGLCVAFSSPCVLVRPEPQIQAPSEMPCRAAGLTELGEIS*

>peptide 2 (60 aa)
MSQSDIDIQSFSFFFRGLVVNWLSCSSRMNQDSIENAATKSDKSVMPEGNVIPMDSATEV*

>peptide 3 (87 aa)
MSLLSTAPSTRVARSMRRLQFSLRPCETRAANPGPKRDAMPSRRIDRTRGDLLIRWLFSSLPPPCIDKAPRLLAQQHPVCLRFPSDR*

>peptide 4 (33 aa)
MLERVEVDCGLTYQGFHISTLVSTDHSLKQPQI*

>peptide 5 (43 aa)
PSLVSGCKPYGIPFPPSLATNPSPSPAIPPTPGRLCFPGDVSS*

Sequence

>CNT3099524
CCGAGCTTAGTTTCTGGTTGCAAACCGTACGGAATCCCCTTTCCTCCCTCTCTTGCCACGAACCCTTCGCCGTCGCCGGCGATCCCACCGACTCCCGGCC
GCCTCTGCTTCCCCGGCGATGTCTCTTCTTAGCACTGCGCCGTCAACGCGCGTTGCCCGGTCTATGCGTCGCCTTCAGTTCTCCCTGCGTCCTTGTGAGA
CCCGAGCCGCAAATCCAGGCCCCAAGCGAGATGCCATGCCGAGCCGCAGGATTGACAGAACTCGGGGAGATCTCCTGATCCGGTGGTTGTTCAGTTCGCT
GCCCCCTCCTTGCATTGATAAAGCTCCTCGATTGCTTGCCCAGCAGCATCCTGTTTGCTTGAGATTTCCATCAGATAGATAGGCGGGCCCTGACTTTTTG
AATGGGATGGATAGGATTTTCTTGCAAGCCACTAGCTACGGACCCATGAATTACTGAAATAGTGCAGCCAGGAGTACTCTGCACACCATGGTTTGATGGA
GATATATCATAGCAACAACTGAACACGAATGCCAGATAAGGATGTTAGAGCGAGTTGAGGTTGATTGCGGGTTAACTTATCAAGGGTTCCACATATCAAC
TCTTGTATCTACTGATCATTCATTGAAGCAACCACAGATCTAGCTGCAGCTCCTGTTGTATCAGTTAACAAAAGCAATACTCAGGTTATATCTTTCTCAG
TCAAGTGCTCCCTCGCAGTCTCAATTATTTACACTTTCGAGCTACTTCGTAATTCTAGAGGCAGCCAGACGCCACCTTGGTTACTCCTGGGTGTTTTGTT
TTGTCTTGCATGGTTTCATAGTTCATATGGGTCCATCAAACTATTTCATTTTTCCAGGAGCACATTACCTCAGTGTATTAGCAAAATCAGCTCCAGAATG
AGCCAGAGTGACATCGATATTCAATCATTCTCTTTTTTTTTTCGAGGATTGGTTGTCAACTGGCTCTCCTGCAGTTCCAGGATGAACCAGGACAGTATCG
AAAATGCAGCCACAAAATCTGACAAGTCAGTAATGCCAGAAGGGAATGTGATTCCTATGGACTCAGCGACTGAAGTATAATATGGTCTGACGTGTTTACT
TCTATGGCCTCATGAGTCACTTGATACTGTTGGTAGGTAATCTTTTCTGTTTTAGTTTGTGTTTATTCCTCAGAAAATATTCTTAAGGATTGTATCAAGT
GCGTATGAACTAGCATGTGTACTGGTCCGTTTACCAACTCTAGCAACTCGAAGTTCTTTAATTTTTCCTTTTTGTTATTTGTGACGATGCTGAGCTAAAT
ATGTTGATGGAGGATTTTTCTTCTCTATGTTATCCAAATTGTGTTTCTTGGGTAAATATCGTGAAAAATCTTAACAGTATATGAGATTGTTACATATAAA
AACTGGCTGGTTATGCTTGTTTAAAAATAAAAAGCTGGCTATTTATTAATTGGTGCAAAAGACTCAGACAGTTATTATGTGTGCAATCTTTTGTGTGTAA
CATTATATCACCGTACTTCTCATGAAACTTTTGGCCAATTTTATTTCATCATTTGCTTTCTGGTCCTTTTTGTAACAATGCTCTAGTGTCCTGTATACCT
GAAAATATCTCTGAGAAGTTCCAGATTTTATTATCAAATATCAAATTATCCTACTGATGCCCGTCGAACAAATATAGTTCTATCTTCATTTCACTAAGTA
TTGGGACATTTTTATTGGAATTGTATGGAAGGAATAATGACTTAATGTGCGAGAAAGCTAGCTAGTAAGCTTCCTAGATGGTTGCTAGGAGCAGACTACT
GGCCTGCAAAAATAATTTTGCAGTATATCTCATGTAAGATTAATGATGCGAGAGCAGCA