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Detailed information on CNT3099509


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30674803Oryza rufipogonSetaria viridis16.3222.7286.32117forward
CNT3066768Oryza rufipogonLeersia perrieri18.414090.91132forward
CNT30107444Oryza rufipogonOryza longistaminata93.3165.4696.86669forward
CNT30574818Oryza rufipogonOryza barthii99.7299.1798.74715forward
CNT30115661Oryza rufipogonOryza nivara57.683.9494.43413forward

Expression of CNT3099509

Peptides detected in this lncRNA

>peptide 1 (42 aa)
MVGSARMAAWTFLYSDSMPSASIPFLRYSLKWAWNFSGSSSAI

Sequence

>CNT3099509
GTGTAAAGCGCCCAAGGGAACTCCAGTTTAGGACAATGCAGGCAAGAAGACCTGAAGATTGACTGCCCGTTGCTAAAAAGGAAAAAGTAACATAAAACAC
TGACAAGTGAAGAGCCAGGCAGAACACATTTTGATCAATATCCAAACGGCAGCTTCTCACATAAATAAGATAACCGATAGCTCCAGGTTGAGAACCAAAA
ACCGAAAGAAATAGGTTCTTTGAGCAGAGTGCAGAACATAAACAAAAATGCCTGTTGCAAATTGCAAGACTACAGGTAAACTTAAATGCCATATGGAGTT
TGTTTGGCAGCATAAGATGAAACTACTGTGATAAGGCTACTCTCTCACTCGTCATCCTCTTCCTCGTCATCATCATCAGCACCAGCGGAGGAGTTGAGAG
CATTCAATCTTTCGACGAGACTGGCCTTCCTCTGCTCGTAGGTCAGCTTCTTGAGGTTGTATCTGCAGCAAAGAGATGGCAAGTTAGTTACATCATACAT
GGACATCACAAATAATCTTTACGAAAATCATCAGCCAGCTTAATATACCTCTTGTGGGTAGCCGGTTCCTTCTTGGTCGATTTGGCCATGGTAGGATCGG
CGCGGATGGCAGCATGGACCTTCTTGTACAGTGATTCCATGCCATCAGCGTCAATTCCCTTCTTGAGGTACTCACTAAAGTGGGCTTGGAATTTCTCAGG
TTCCTCCTCAGCCATAG