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Detailed information on CNT3099505


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT002550, E-value = 2e-146

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30552265Oryza rufipogonOryza glaberrima50.4344.7697466forward
CNT30111333Oryza rufipogonOryza longistaminata5090.7793.72462forward
CNT30574820Oryza rufipogonOryza barthii50.4348.7492.92466forward
CNT30115748Oryza rufipogonOryza nivara54.8761.3897.44507forward

Expression of CNT3099505

Peptides detected in this lncRNA

>peptide 1 (41 aa)
MCFTVCEHGVCESENYVLNYVFWCWCVLEMKICLMYCNLVR*

Sequence

>CNT3099505
CTGATGATAGGTGATCTCATGCAAAAATTAAACATGTAGATGATGAACATACCAACATTCAGTGACAGGCCACTGTCAGTGGGTCGAAAGCTGGAGTGAA
ATCCCCGACAAGAGATTTTCTCCCGTCCTCCTTTCGGTACCCCAGTTTTCATCCAGCCGTCCATTGCTGAGGGGTACGATGGGCATGAGGCTGTATCGCG
TGCGCTATCCATAGACCATCTCAGGTTTTGGGCGACCTCATCCTGAAGCGCCATAGCCATCCCACGACCAAGCAGGCATCAAGGGTTACCGACCCGCTCG
ACCGGAAGCGCCGCCGCGGCAGGTGCACGGGCTACCGCCGGTGGACGTTGCCGCCGCCGCCCCCCGCGCCCGTCGCGGCCGCCGCTGCAGGTGCTCGTCG
CCCCTGCCGCCGACTCCTGTGATTTCATCGCTCTCGTAGAGGCAAACTCTTTATGGGTGAGAGGAGTATCGTACGATTACTGCTATGAGATTCAAGACTG
AGGATGACGGCTTCAAGTTATAGGCTATTACATTTTGCAATCATGTCTCTAAGTTGTTTTGTCATTCCTACAATTTCAGGAAAGTAGAAGAAGATGTGTG
AGATGGATAAGAAGTAGAAGCAGCCCTTTGCTATGCACTTTACATAGTTTTGTCATGCTCTTGGTCGTAATGAATACATTGGACTGTAATAAATCTTGAT
GTGCTTTCCTGTAGTATGATGGATGTACTACTATTTTGAGTTGTGCTCGCATGGTTGAATTTTGATGTGTTTTACTGTATGTGAACATGGTGTATGCGAA
TCTGAAAATTATGTGTTAAATTATGTGTTTTGGTGCTGGTGCGTTCTGGAAATGAAGATATGTTTGATGTATTGCAATTTGGTGCGCTAAATTGTTTACT
GTATGTGAGTATGAAGTTGTGCTA