Detailed information on CNT3099503


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30552385Oryza rufipogonOryza glaberrima34.5445.3596.67390forward

Expression of CNT3099503

Peptides detected in this lncRNA

>peptide 1 (87 aa)
LRPPPNRQRSVSFPFSFALRRDRQPPPSHPHGPIPRRPPPFALRPSPNAALTSIPLNPGHRCPRSGRRSDPIAPRRHPDRGQEIEQR*

>peptide 2 (50 aa)
FALRQIASARFPFPFPSPSGGIANRRPRTPMAPSRAARRPLLSALRQTPP*

>peptide 3 (94 aa)
SPSAKSPALGFLSLFLRPPEGSPTAALAPPWPHPAPPAALCSPPFAKRRLDFDPPKPWPPLPAFRSPFGPHRAASPPGPRPGDRAAVDVRRLPP*

>peptide 4 (29 aa)
MPFMYGFSLRWSQAARSCGPCYRLNQLIF*

>peptide 5 (40 aa)
MPLPSNPISFKRQVAAAATRFSTGHVKALHEMRGRLNDGG*

>peptide 6 (36 aa)
MGNQKALSPWLLSGYHCWRSFWSCRQHDRYQPKALR*

Sequence

>CNT3099503
CTTCGCCCTCCGCCAAATCGCCAGCGCTCGGTTTCCTTTCCCTTTTCCTTCGCCCTCCGGAGGGATCGCCAACCGCCGCCCTCGCACCCCCATGGCCCCA
TCCCGCGCCGCCCGCCGCCCTTTGCTCTCCGCCCTTCGCCAAACGCCGCCTTGACTTCGATCCCCCTAAACCCTGGCCACCGTTGCCCGCGTTCAGGTCG
CCGTTCGGACCCCATCGCGCCGCGTCGCCACCCGGACCGCGGCCAGGAGATAGAGCAGCGGTAGACGTGCGGCGTCTTCCTCCTTAATCCGTCACCTCGG
TTTCTTAGTTCCTCCCACCATGCCCCTCCCTTCCAACCCTATCTCCTTTAAGCGCCAAGTCGCCGCAGCAGCAACGAGGTTCTCAACGGGGCATGTTAAG
GCTCTGCATGAGATGAGAGGTCGACTCAACGATGGAGGCTGAAAATAAAGCTTGATGTTAAGAACATGCCATTTATGTATGGGTTTAGTTTGCGTTGGAG
CCAAGCTGCCAGATCGTGTGGTCCCTGTTACAGGTTGAATCAACTAATTTTCTGACAGTAGATGTGCTGACGTTCATATACTGCAGTTGAATTTAACTTC
CAAATATTACTGCCAGCATCCGGCCTCCTCAACATCAGATCAGTGTTTCAGATTGAAGGAAAAAACGCATGTCCTCCCACTAGGAGTGGTTAGTGGTTCA
TTCTTGAGCATACCAGAAGAAACACGTGCGGTACCACGTGATTATCACTGGCTTAACTCTTTATGTAATTTTTTGCTTGAACCTTAATCCCACCCCTTCT
ATGGGGAAATGTAATGCCTTTAAAATATCAAATGTCACTATGACGTTATATCTTTTTCAATTTGAGTTATCAATTGTCACCCCGTAGCGTTAGCACGGGC
ATATTACTAGTGTTTTTAATTGATAAGCATTATATTTCAATAACTATCATTCCGTGCCGCACAGGCGCATGGGCAATCAAAAGGCCTTATCCCCATGGCT
ACTTAGTGGTTACCATTGTTGGCGTAGTTTTTGGTCATGCCGCCAACATGATCGGTATCAACCTAAAGCTTTACGGTGATATAGAGTCACTAATCACCTC
TAGAAGAAACCTCCTGGTCAATATGTGTT