Detailed information on CNT3099473


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30595589Oryza rufipogonOryza meridionalis10083.9998.43383forward
CNT30369403Oryza rufipogonOryza glumipatula99.7458.1499.74382forward
CNT30575061Oryza rufipogonOryza barthii10042.1399.74383forward

Expression of CNT3099473

Peptides detected in this lncRNA

>peptide 1 (38 aa)
NINNRRPASSNTVPKKVPIAQTKKQSEDIGSGRWRTRR*

>peptide 2 (62 aa)
MSSASCCSSSSYSPSSSAVASWYCWYSETRSMPWRGLSVECHRHWTSHCWGSTRRSRMSSCSG

Sequence

>CNT3099473
AAATATCAACAATCGCAGACCAGCATCAAGTAATACAGTACCCAAAAAGGTTCCCATAGCACAGACGAAAAAACAAAGCGAAGACATAGGAAGCGGGCGG
TGGCGTACGAGGCGGTAATACGGTGATAATGTAAGACGGAAACACCAAGCACACAAAACCCTGCCCTAGAACCACCAAGCAAAAGCCACCTTACATGTCG
TCAGCCTCCTGCTGCTCCTCGTCCTCGTACTCGCCCTCCTCATCGGCGGTGGCATCCTGGTACTGCTGGTACTCAGAGACAAGGTCGATGCCATGGAGAG
GCCTCTCGGTGGAATGTCACAGACACTGGACTTCACATTGTTGGGGATCCACTCGACGAAGTAGGATGAGTTCTTGTTCTGGA