Detailed information on CNT3099471


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30670689Oryza rufipogonSetaria viridis10023.53100252forward
CNT3094274Oryza rufipogonSolanum tuberosum10085.4298.81252forward
CNT30300699Oryza rufipogonTriticum aestivum75.7935.44100191forward
CNT30384972Oryza rufipogonTriticum turgidum75.7930.86100191forward
CNT30508923Oryza rufipogonSolanum lycopersicum67.4650.998.24170reverse complement
CNT30554477Oryza rufipogonOryza glaberrima10034.8598.41252forward
CNT30147396Oryza rufipogonMedicago truncatula75.796.4297.91191reverse complement
CNT30441199Oryza rufipogonAegilops tauschii75.7919.23100191reverse complement
CNT3067980Oryza rufipogonLeersia perrieri53.5744.8596.3135forward
CNT30208772Oryza rufipogonHelianthus annuus75.7935.398.43191reverse complement
CNT30718256Oryza rufipogonMalus domestica golden40.0833.0195.05101reverse complement
CNT30357719Oryza rufipogonLactuca sativa83.3311.2698.57210forward
CNT3056076Oryza rufipogonAmborella trichopoda75.798.391.1191reverse complement
CNT30320583Oryza rufipogonAsparagus officinalis61.5114.13100155reverse complement
CNT30118993Oryza rufipogonCitrus clementina69.0549.4392.53174reverse complement

Expression of CNT3099471

Peptides detected in this lncRNA

>peptide 1 (59 aa)
PRRTFDPLSESPSTRDSRITMADFRLCSTSRSHSQAGLYHYAHEQNQRLSLPSHTSVTL*

Sequence

>CNT3099471
ATCCCCGGCGTACCTTTGATCCGTTGAGCGAGAGCCCTTCCACACGGGACTCCCGGATCACTATGGCCGACTTTCGTCTCTGTTCGACCAGTCGGTCTCA
CAGTCAGGCAGGCTTATACCATTACGCTCACGAGCAGAATCAACGCTTGAGCCTACCTTCGCACACCTCCGTTACTCTTTAGGAGGCATCCTTAGACGAA
AGAGTGGTCTTTCAGGATTGGTCGTTGTGTGTCACCACCTCCCACCTATCCT