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Detailed information on CNT3099363


BLAST search results

BLAST vs Swiss-Prot:
sp|P07370|CB2B_SOLLC, E-value = 2e-141

BLAST vs NONCODE:
NONSTUT001352, E-value = 6e-171

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30380511Solanum tuberosumManihot esculenta33.449.5788.54349forward
CNT30562273Solanum tuberosumActinidia chinensis60.2963.5788.41630forward
CNT30598305Solanum tuberosumFraxinus excelsior41.2463.188.4431forward
CNT30609649Solanum tuberosumGossypium raimondii55.8977.1586.47584forward
CNT30623366Solanum tuberosumDaucus carota63.2563.586.54661forward
CNT30359492Solanum tuberosumLactuca sativa56.7569.3685.83593forward
CNT30409978Solanum tuberosumPapaver somniferum55.660.981.41581forward
CNT30119285Solanum tuberosumCitrus clementina60.5770.8185.78633forward
CNT30499258Solanum tuberosumDigitaria exilis63.1665.2283.79660forward
CNT30725273Solanum tuberosumLupinus angustifolius62.7863.6986.28656forward

Expression of CNT3099363

Peptides detected in this lncRNA

>peptide 1 (30 aa)
RRKCSLGHYSISFLFGMKVLVFDSYRGFRK*

>peptide 2 (67 aa)
MPLGHQQDPMGQSFHRGIVGPQPHQEVHLQYGIPQRLPSTQLGKPKWPRCFEHGPSLGCPSSQVHPR*

>peptide 3 (34 aa)
MITFREQSLWRRPRRCCLLGLQGDQQGSPMDPFR*

>peptide 4 (68 aa)
MDQAWVAQVVKSTLAEDLGSSLEPHSLTKLDTVAGQELREDTSKSTKHSPSAVDHLEFTVLGKGFWIC*

Sequence

>CNT3099363
TCGTCGAAAGTGTTCATTAGGGCATTATTCTATTTCTTTTCTTTTTGGAATGAAAGTTTTAGTGTTTGATTCGTATCGCGGGTTTAGAAAATGAAAATTC
AGGACTAAAAATCATTGGAATATAAGAAAAATCCATTCTATTGTCAACTCATTCACAACAACTTTACATGAAAATTTGAGATCATTTTATGATCACTTTC
CGGGAACAAAGTTTGTGGCGAAGGCCCAGGCGTTGTTGTTTACTGGGTCTGCAAGGTGATCAGCAAGGTTCTCCAATGGACCCTTTCCGGTAACAATGGC
TTGAACAAAGAATCCAAACATAGAGAACATAGCAAGTCTGCCGTTCTTGATCTCCTTTACCTTGATTCAGCAAATGCCTCTGGGTCATCAGCAAGACCCA
ATGGGTCAAAGCTTCCACCGGGGTATAGTGGGTCCACAACCTCACCAAGAGGTCCACCTGCAATACGGTATCCCTCAACGGCTCCCATCAACACAACTTG
GCAAGCCCAAATGGCCAAGATGCTTTGAGCATGGACCAAGCTTGGGTTGCCCAAGTAGTCAAGTCCACCCTCGCTGAAGATCTGGGATCCAGCCTTGAAC
CACACAGCCTCACCAAACTTGACACCGTTGCGGGCCAAGAGCTCAGGGAAGACACATCCAAGAGCACCAAGCATAGCCCATCTGCAGTGGATCACCTCGA
GTTCACGGTTCTTGGCAAAGGTTTCTGGATCTGCTGAAAGTCCAGCGGTGTCCCACCCATAGTCACCAGGGAATTCACCGGTCAAGTAGCTTGGGGACTC
ACCAGAGAATGGGCCCAAGTACTTAACACGGTCTGGTCCATACCATGGGCTGCTAGACGAGGCAGACTTGGCGACAGCCTTTCTCATAGTGATCCTTCCA
TTTCCAGTAATTTCTGAGGCAGATGGTGAAAGCTTCACTGCCTGTCCTGCAAAAGAAGGGGAAGAAAGAGCCATTGTAGCAGCTGCCATGGTTTTATCTG
AAGAGAAAAGTAAGTGTTGGAGGGTTTGAAATATTGTTGAAGTTG