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Detailed information on CNT3099072


BLAST search results

BLAST vs Swiss-Prot:
sp|Q2F969|RM02_ORYSI, E-value = 1e-17

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30511958Solanum tuberosumSolanum lycopersicum19.5864.2697.2214forward
CNT30332839Solanum tuberosumDioscorea rotundata25.8916.6886.57283forward

Expression of CNT3099072

Peptides detected in this lncRNA

>peptide 1 (71 aa)
PDAGIIVGHYVPRSSKKTDSSYSSFSFRIGSSLVLLSLMVSPFSSSSSSREGLFYRLPLPFTLIWSLSSKK*

Sequence

>CNT3099072
TCCCGATGCTGGCATAATTGTCGGACACTACGTTCCTCGATCTTCAAAGAAAACTGACTCCTCCTACTCCTCCTTCTCCTTTAGGATAGGATCCTCCTTG
GTCCTTCTTTCACTAATGGTCTCACCATTTTCTAGTAGTAGTAGTTCGCGCGAGGGACTTTTCTATCGCTTGCCCTTGCCTTTCACTCTCATTTGGTCTC
TTTCTTCTAAAAAATAAAGTGAAGCAAAGCGCATGGCAAAGAAGCAGCAAGCTGACTGCCCCCTTCCACTCGGCCTTTCTTCGCTGTGTGAATAAGGTCT
TAGTTTGTATGGGCATTCTGGGCAGGCTGCAATAAGTCGCTAGTCGAAGGTTTAGACCAATCGCAATTCATCACCATCTTGCCCGCCTCCAATTGATGAC
TGGCTATTATATAAGTGTTGACCTAAGCCCCTGCGCAGGGGCTCGGCTCCCGAACCGTATGTGAGCTGTCTCGTACGGCTCTTCCTAAGAACTTGAAGCC
CCCTCTCTCTAAATAGAAAAAATGCATTTACAAGAAAAAAAGACTTTTTCAAAAAGCCTTCGCCCGCCTATTCAACGGGGCTATTAGAGAAGCTGCTTCG
TTCCTTGACTTCTTTTCTCAGTCAAGCTTCATTGTTCCTTAGTATAGTCTCGGTCCATAGTTTAAGACTCCGTTCCTTATAGCCTAGTCTATATCCACAG
CTGACGTGACTCCGTACCGACGCCTTTCCCTTTGTATAGTATACGGCTAAGTGACTTCATAACCTCAACCTACTTGCTTACTGTAGCATAGGCCTTCGTC
GGGCTTTCGTCCCTTCGCCTATAGACGGCGGCTTGGCTTCGCTATCTCTCATGACTTGGTATAGAGCTGTGTAGTCGTCGGTTTTACCACCAGAATGCCT
ATGAGATAGTGGTAGTGGTCGGCCTTTCGAATGCCTTCTTCCTTACTTTTCTGAGAAGCCCTTTACGACTATACTATAAAGGACAGGGGGGTGTTCGCCT
TTGGAAACTTAGCTACTTAAGTCCTTATCAGAAAGTCAAAGTAAGGGCGAACGTCATTCTGTTCTACAGCTACAACACTATATATTTATTATT