Detailed information on CNT3098913


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONCQUT004405, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30311890Solanum tuberosumCamelina sativa73.1141.4697.541017forward
CNT30628168Solanum tuberosumDaucus carota92.67100.7895.661289forward

Expression of CNT3098913

Peptides detected in this lncRNA

>peptide 1 (32 aa)
MKYECPRLSLLIITPIPKANVIGPKSYNVIPC*

>peptide 2 (44 aa)
MLSQLFVFHKSKNFTSDYEIRMPPTVPVNHYSDPEGQRNRTEIL*

>peptide 3 (42 aa)
MDFSRRRGQRTAHVAAIRTFHRIIQSERRAVCTKGRDVVNAS*

>peptide 4 (54 aa)
PTETLLRLLLPLNDKVQWTSRDVAGSEPPTSPRSEHFTGSFNRSDGRCVQRAGT*

>peptide 5 (44 aa)
MKFQRLPGPVGQGYKLVEYISVARVRPRTSKGITDLLLPQTSAA*

>peptide 6 (52 aa)
MIRFNGLLATSRAANRPRRRDPNISPDHSIGATGGVYKGQGRSQRELMTRAY*

Sequence

>CNT3098913
CACCTACGGAAACCTTGTTACGACTTCTCCTTCCTCTAAATGATAAGGTTCAATGGACTTCTCGCGACGTCGCGGGCAGCGAACCGCCCACGTCGCCGCG
ATCCGAACATTTCACCGGATCATTCAATCGGAGCGACGGGCGGTGTGTACAAAGGGCAGGGACGTAGTCAACGCGAGCTGATGACTCGCGCTTACTAGGA
ATTCCTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTACCCGGGCCTGTCGGCCAAGGCTATAAGCTCGTTGAA
TACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGCGGCCTAAAAGGCCGTAGTCCCTCTAA
GAAGCTGGCCGCGAAGGGATACCTCCGCATAGCTAGTTAGCAGGCTGAGGTCTCGTTCGTTAACGGAATTAACCAGACAAATCGCTCCACCAACTAAGAA
CGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTCTCAGTCTGTCAATCCTTACTATGTCTGGACCTGGCTGAGGTCTCGTTCGTTAACGGAATTA
ACCAGACAAATCGCTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTCTCAGTCTGTCAATCCTTACTATGTCTGGACCT
GGTAAGTTTCCCCGTGTTGAGTCAAATTAAGCCGCAGGCTCCACTCCTGGTGGTGCCCTTCCGTCAATTCCTTTAAGTTTCAGCCTTGCGACCATACTCC
CCCCGGAACCCAAAAACTTTGATTTCTCATAAGGTGCCGGCGGAGTCCTAAAAGCAACATCCGCCGATCCCTGGTCGGCATCGTTTATGGTTGAGACTAG
GACGGTATCTGATCGTCTTCGAGCCCCCAACTTTCGTTCTTGATTAATGAAAACATCCTTGGCAAATGCTTTCGCAGTTGTTCGTCTTTCATAAATCCAA
GAATTTCACCTCTGACTATGAAATACGAATGCCCCCGACTGTCCCTGTTAATCATTACTCCGATCCCGAAGGCCAACGTAATAGGACCGAAATCCTATAA
TGTTATCCCATGCTAATGTATACAGAGCGTAGGCTTGCTTTGAGCACTCTAATTTCTTCAAAGTAACAGCGCCGGAGGCACGACCCGGCCAATTAAGGCC
AGGAGCGCATCGCCGACAGAAGGGACGAGACGACCGGTGCACACCTAGGGCGGACCGGCCGTACCATCCCAAAGTCCAACTACGAGCTTTTTAACTGCAA
CAACTTAAATATACGCTATTGGAGCTGGAATAACCGCGGCTATTGGACTCATTCCCAATTACCAGACTCATAGAGCCCGGTATTGTTATTT