Detailed information on CNT3098801


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9M0X5|CRK25_ARATH, E-value = 5e-28

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30315005Solanum tuberosumCorylus avellana38.847.8981.56141forward
CNT30547200Solanum tuberosumIpomoea triloba61.9850.984225forward
CNT30517903Solanum tuberosumJuglans regia26.173.6985.2695forward
CNT30701990Solanum tuberosumQuercus lobata39.9424.8382.76145forward
CNT3085819Solanum tuberosumVigna radiata27.827.784.16101forward
CNT30146054Solanum tuberosumMedicago truncatula22.876.1385.5483forward
CNT30129040Solanum tuberosumCorymbia citriodora23.6923.3183.7286forward

Expression of CNT3098801

Peptides detected in this lncRNA

>peptide 1 (84 aa)
MLLLINSGATYPIVPRAAVRVTMLLSVGYNFASPKSEIFGMKFSSKRMLCGLMSKCKIRTSQPRCKYPIPRATPRIMSYFLCQLN

>peptide 2 (29 aa)
MQNSYITASMQIPNSSSHSKNNVILPLPT*

Sequence

>CNT3098801
TTCAAGTCCAACATTTCCATTAGCAGCTTCATTTCTCTTCAAGTCCAACATTTCCATTAGCAGCATTCCGAAGCTGTAAACATCAGCTTTGTACGAGATT
GCTCCAATGCTTCTGCTGATCAACTCTGGAGCAACATATCCAATCGTTCCACGAGCAGCTGTGAGAGTCACAATGCTCTTATCTGTTGGATATAATTTCG
CAAGCCCAAAGTCAGAAATCTTTGGAATGAAATTCTCATCCAAAAGAATGTTGTGTGGTTTGATGTCAAAATGCAAAATTCGTACATCACAGCCTCGATG
CAAATACCCAATTCCTCGAGCCACTCCAAGAATAATGTCATACTTCCTCTGCCAACTTAACAG