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Detailed information on CNT3098566


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT3021611Solanum tuberosumCitrullus lanatus30.5926.285.58104forward
CNT3085325Solanum tuberosumVigna radiata36.1817.481.3123forward
CNT3080335Solanum tuberosumBrassica juncea38.2422.9383.85130forward
CNT30260467Solanum tuberosumBrassica rapa39.4132.1384.33134forward
CNT30475173Solanum tuberosumSaccharum spontaneum3516.0282.35119forward
CNT30574555Solanum tuberosumVitis vinifera23.829.7985.1981forward
CNT3038372Solanum tuberosumCucumis melo32.351085.45110forward
CNT3050211Solanum tuberosumCucumis sativus32.3529.2686.36110forward

Expression of CNT3098566

Peptides detected in this lncRNA

>peptide 1 (67 aa)
SCSFSAKKLSMFLFNTNRPTGINGKRSSGHVLVTSRGSKSNLSTSSGSIDSFQLQLNRKDPWSRGYD*

>peptide 2 (37 aa)
MISTTDSNSFFLRHTFHTTSWLPVELHIMCFPLFFLN*

>peptide 3 (49 aa)
ELLILSKEVINVPVQYQSTNWDQRQEILRPCLGYIQRIKIELVYILRVH*

>peptide 4 (56 aa)
RAAHSQQRSYQCSCSIPIDQLGSTARDPQAMSWLHPEDQNRTCLHPQGPLIVSSCN*

Sequence

>CNT3098566
CGAGCTGCTCATTCTCAGCAAAGAAGTTATCAATGTTCCTGTTCAATACCAATCGACCAACTGGGATCAACGGCAAGAGATCCTCAGGCCATGTCTTGGT
TACATCCAGAGGATCAAAATCGAACTTGTCTACATCCTCAGGGTCCATTGATAGTTTCCAGCTGCAATTGAATCGTAAAGATCCTTGGTCGCGTGGCTAT
GATTAGTACCACCGACTCTAATAGCTTCTTCCTCAGACATACATTTCACACCACAAGTTGGCTTCCAGTGGAACTTCACATAATGTGCTTTCCCCTCTTT
TTTCTCAATTAGATAATAATCCTCAAGCAGAACAGGCCCT