Detailed information on CNT309847


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30587177Zea maysMusa acuminata4.8620.1286.3666forward
CNT30459193Zea maysSaccharum spontaneum44.767.6786.33607forward
CNT30107387Zea maysOryza longistaminata11.3420.1688.96154forward
CNT30100086Zea maysOryza rufipogon11.3425.5488.31154forward

Expression of CNT309847

Peptides detected in this lncRNA

>peptide 1 (30 aa)
MKKQVMLSMNTLAQILTGICWMLQADFMKS*

>peptide 2 (40 aa)
MQYEFQITYSSRIQVRKTHCSLLDLLINFCEKANWCVKDS*

>peptide 3 (29 aa)
GRTNSSTPHRAEPGEWESSSDFACLPPPW*

>peptide 4 (29 aa)
MFCNSTRILTIQCHVTQLKWQKEFLTFTG*

>peptide 5 (76 aa)
GAPTVQHHIEPSRENGNPAQISLVSLRRGEPPAGDVCPVAFPSLRRPGHLLASHGSASCQASKLPLARRPSAAASI*

>peptide 6 (96 aa)
AHQQFNTTSSRAGRMGIQLRFRLSPSAVVSPPRATCVPLPFLRFDGQATCWPRMALRPAKHPSSLSPGGPAPRRLYRARSARSPPIGNRCTLPQLL*

Sequence

>CNT309847
GGGCGCACCAACAGTTCAACACCACATCGAGCCGAGCCGGGAGAATGGGAATCCAGCTCAGATTTCGCTTGTCTCCCTCCGCCGTGGTGAGCCCCCCGCG
GGCGACGTGTGTCCCGTTGCCTTTCCTTCGCTTCGACGGCCAGGCCACCTGTTGGCCTCGCATGGCTCTGCGTCCTGCCAAGCATCCAAGCTCCCTCTCG
CCCGGCGGCCCAGCGCCGCGGCGTCTATATAGAGCCAGATCCGCGCGATCCCCGCCAATCGGCAATCGCTGCACCCTGCCTCAACTTCTCTAGCTCACCC
GCATCCCTGCTCGGCACTGCCTTGTGCCTTCTCCTCGCACTTCCCTTCTTCTTGTATCTAGCCCCCCTTCATCACAATCACCGGCAGCGGCGCGCCGTCG
TCTCAGATTGATGCAAGGGGCGGTGACGAGCTAGAGGCAGCAACTGCATATCTTGCAAGAAAATTGGTTTTCGAACCATACCGATAATTTTCTTGCAAGT
TGTGCAGTTGTTGTCTCAAGCTTGCTGCCTCCCTTTGCCAAAACTATGAAGAAACAGGTTATGTTATCAATGAACACATTGGCACAGATTTTAACTGGTA
TATGTTGGATGTTGCAAGCAGACTTCATGAAGTCATAACAAGGCGAGTGCTAATTCTTACAAGAACATGTCAGTATAAGTAAATGATCTCCTGATTTTAT
GATTTGAAGGGTGCCGAGTGCCTTTTAGTCAATTAGTCAATGCTGGTTCTTCTACCGTTACGTGTTCAGAGTGTTCAGTATCTATTCTACGACAACCTTT
GATGTTAGTAGAGCTTGGACCTGTTCCAACTTAATTTCACTGCTACGTATATTTTAGAGCACAATCAACCGGCTGGATTGGCATACACAGTTTTATTCTA
CGTTCTTTTTTTTTTTGCAAGGTTGTAGAAGACGACTGGTATATTTGAGGGCAGCTTCTGGCATGTAAACTATACGGCCTGCGGCCTGGTACTTCGGAGT
TCATGGGATGTTCTGCAACAGCACTAGAATTCTGACAATCCAGTGTCATGTGACACAACTGAAGTGGCAAAAAGAATTCCTAACATTTACTGGATAAAGC
ATCTGCTGACATATTGTTTTCGTGATGCAATATGAGTTCCAGATAACATACAGCAGTAGAATTCAAGTTCGTAAGACACACTGTTCTCTGTTGGATCTCC
TAATTAACTTCTGTGAAAAGGCTAACTGGTGTGTTAAGGATTCCTAGTCACCAACATGTAAATTTTGATTTGAGAACATGTAAATAAGATGCATTGATGT
TTTATTACTAATGACTAGCAAACATGCCTGCGTTGCAACGGGAAAAAAACTAGCAAAT