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Detailed information on CNT3098190


BLAST search results

BLAST vs Swiss-Prot:
sp|P05488|RT13_TOBAC, E-value = 6e-34

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30501657Solanum tuberosumCoffea canephora55.415.8496.86287forward
CNT30225767Solanum tuberosumHordeum vulgare23.5516.8391.8122forward
CNT30592619Solanum tuberosumMusa acuminata42.479.5485220forward
CNT30228064Solanum tuberosumAnanas comosus11.5820.349560reverse complement
CNT30209850Solanum tuberosumHelianthus annuus30.8917.9894.38160reverse complement
CNT30687453Solanum tuberosumTriticum urartu42.084.0889.45218forward
CNT30721236Solanum tuberosumTriticum spelta17.1826.0293.2689reverse complement
CNT30354619Solanum tuberosumLactuca sativa42.0813.0995.87218forward
CNT30574571Solanum tuberosumVitis vinifera57.724.8695.65299forward
CNT30104330Solanum tuberosumOryza rufipogon42.0825.4789.45218forward
CNT30115707Solanum tuberosumOryza nivara42.08589.91218forward

Expression of CNT3098190

Peptides detected in this lncRNA

>peptide 1 (49 aa)
MILSIGRTTVSGLNFDPYFFLHIVKGSKARFLLPLLIEKGHSCRRFSDS*

>peptide 2 (37 aa)
MAFLGPIPSILVEAILTCSSPTNLAPEIYNILDPSFY*

Sequence

>CNT3098190
TTCATTTGTTCAATTTGGTCGATTTGATACTTAGTTAATTCTTTTATCTTTATGTTTCCACTGATACCTAATCGATAACGAACCTGAATGGCTTTTTTAG
GGCCAATTCCATCAATTTTGGTTGAGGCAATTCTTACTTGTTCATCGCCAACTAATCTAGCTCCTGAAATATATAACATTCTTGATCCTTCCTTTTACTA
GTCTTCTCGGCTGGAATCATAAATGGGTTGTCTCCTCTTTCATGATCCTTTCTATAGGTAGAACTACTGTGAGCGGTCTAAACTTCGACCCTTATTTCTT
TCTTCATATTGTAAAGGGGAGCAAAGCCCGTTTTTTGCTCCCTCTATTGATAGAAAAAGGGCACTCCTGCCGTCGTTTCAGTGACTCATAGGGCTTCCCT
CAGCGCAGTCTTTTTCGTTCTTGAGAATGGTCGCCACTTCTACCAGGACCGGAATGATTATCCCTGCCCGATGGGTCTACATCCATCCCTGAATGTCGTC
GGGTACTGTTAACTTCCC