Detailed information on CNT3098138


BLAST search results

BLAST vs Swiss-Prot:
sp|P93286|CCMFC_ARATH, E-value = 2e-111

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30509004Solanum tuberosumSolanum lycopersicum20.5718.0487.78180forward
CNT30625184Solanum tuberosumDaucus carota20.4614.2492.18179reverse complement
CNT30679531Solanum tuberosumTriticum urartu94.6393.3586.23828forward

Expression of CNT3098138

Peptides detected in this lncRNA

>peptide 1 (41 aa)
QAYGDRRRSASTRRNHYFGSFYAIMNSTELFQFQRNLSFWR*

>peptide 2 (43 aa)
PGVRGPSKKCLNAPQPLLWLLLCNYELHGTFSIPTQLILLEIT*

>peptide 3 (45 aa)
MINTSQTTTLLPHMEFGTLRQSLSELYLFVARQKITQHKDEHSSM*

>peptide 4 (75 aa)
MYSHFSRARPFSKVSFFWEHGQPEIIMFAILHPPMDKMLQVFPFSYEAGKWIGNRSSRNDSSCSNKSRSLVRDGL*

>peptide 5 (58 aa)
MVNQKLLCSRFFIHRWIKCSRFFHSHMRPESGLGTGRHEMIHHAQTRVDHSLGTVYRS*

Sequence

>CNT3098138
GCCAGGCGTACGGGGACCGTCGAAGAAGTGCCTCAACGCGCCGCAACCACTACTTTGGCTCCTTTTATGCAATTATGAACTCCACGGAACTTTTTCAATT
CCAACGCAACTTATCCTTTTGGAGATAACGTAACAAACTACGCGAGCCTCCCAATGAAGCCAACATAAATCTGATCCGAATAAAAACAAGAAAAGGAAGT
TTGATTATTGTGGTATACCAGCCACCTGTTCTGGAACTTCCAGTTCCAATCGAAGCATATAGATCCGTAAATAGATTTGTATGTATAGCCACTTCAGTCG
TGCTCGTCCTTTCTCGAAAGTATCTTTTTTTTGGGAACATGGTCAACCAGAAATTATTATGTTCGCGATTCTTCATCCACCGATGGATAAAATGCTCCAG
GTTTTTCCATTCTCATATGAGGCCGGAAAGTGGATTGGGAACAGGTCGTCACGAAATGATTCATCATGCTCAAACAAGAGTCGATCACTCGTTAGGGACG
GTTTATAGATCATAAAATTCCCACAAATGGAATGAAAAGTGGGTCCATGTAAATGATCAACACCTCGCAAACAACAACGCTCCTTCCCCATATGGAGTTC
GGAACCCTAAGGCAATCGTTGAGTGAACTGTATCTTTTTGTCGCACGACAGAAGATCACCCAACATAAAGATGAACACTCCTCCATGTGAAATATTCATC
TTCATAGGAACTTTTTTATAGTAGTCGTGACCAACAGCCATCAGCTCTCAGCTTGTTGGTAAGGTGAGAGCTTCAAGCCCGATTTCAGGTGGCGCACCCT
CCACACAAGCACCGCCCGACGAAGGGGGGACGGGGAAAGCTACATTCTCAAACCTTTCGACCCTTCTTTCTAAAT