Detailed information on CNT3098127


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30605219Solanum tuberosumGossypium raimondii30.522.9592.38105reverse complement
CNT30596149Solanum tuberosumOryza meridionalis30.5230.0990.48105forward
CNT30104748Solanum tuberosumOryza rufipogon23.555.7892.5981forward

Expression of CNT3098127

Peptides detected in this lncRNA

>peptide 1 (44 aa)
MESIIVRRPSLKWNFHAGARTSMKVDLLRPARLFLFHFLLPSPS*

>peptide 2 (51 aa)
AKDWDVKQNGMYQIFSTYNHQTRDQSRARQNGKYHSTSSFPEMELSCWSKN*

Sequence

>CNT3098127
TTGCGAAAGACTGGGATGTGAAACAAAACGGAATGTACCAGATTTTTAGCACGTACAACCATCAAACCAGAGACCAAAGCAGGGCTCGACAAAATGGAAA
GTATCATAGTACGTCGTCCTTCCCTGAAATGGAACTTTCATGCTGGAGCAAGAACTAGCATGAAAGTCGATCTATTACGACCAGCGCGGTTGTTCCTATT
TCATTTTCTTCTTCCAAGCCCTTCTTAGAAAGCACTCACTGAGTTACTTACGGAATCTCAAATCTCTCTCGACACCGAGAATTCTTTATGTGTCCAGGTC
GATTAGAGGTTCGGCTTCCTTCTCCCCCACCTTTTAGCCTTCTG