« Back to Solanum tuberosum search


Detailed information on CNT3098037


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30511787Solanum tuberosumSolanum lycopersicum24.2610.6789.21139forward

Expression of CNT3098037

Peptides detected in this lncRNA

>peptide 1 (73 aa)
MNNPTLQKVGGRWGWIFDVACLRCTCPSKDKDKDNNNNNNNNNNNNNNNNNNNNNNNNDDDDFVSNVCKAACC*

>peptide 2 (56 aa)
MANILLIFSLVLMIISSEVIAREIVEPSLPLLEGNSEYRDEQPNTPKSRWKMGMDF*

>peptide 3 (84 aa)
MWRVYVALAQAKIKIKIIIIIIIIIIIIIIITIIIITITIMMMMILLVMFVKPLVVRNKRITKSFSSNRLPTIIYFANNMKLIE*

Sequence

>CNT3098037
AAATCATTCACAAATTAAATATCAACAAACTCATATAAAATGGCAAATATTTTGCTTATATTTTCTTTGGTTCTTATGATTATATCATCAGAAGTTATTG
CAAGGGAGATAGTTGAGCCTTCACTTCCATTGCTTGAGGGTAATTCAGAATACAGAGATGAACAACCCAACACTCCAAAAAGTAGGTGGAAGATGGGGAT
GGATTTTTGATGTGGCGTGTTTACGTTGCACTTGCCCAAGCAAAGATAAAGATAAAGATAATAATAATAATAATAATAATAATAATAATAATAATAATAA
TAACAATAATAATAATAACAATAACAATAATGATGATGATGATTTTGTTAGTAATGTTTGTAAAGCCGCTTGTTGTTAGAAACAAAAGAATCACAAAATC
ATTTTCTTCAAATCGACTACCCACTATTATATACTTTGCCAATAATATGAAATTGATTGAATAAAGGATAAGTTTAAATTATATATCCTCATGTTATTTT
TTCACTTCAATGGTTTTTGTTGTGACGGTCACCTCAATCCAATTTAGTGTATCAAAATTTGCGCAAATATTTT