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Detailed information on CNT3097205


BLAST search results

BLAST vs Swiss-Prot:
sp|Q96262|PCAP1_ARATH, E-value = 5e-14

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30505917Solanum tuberosumNicotiana attenuata20.3819.1787.6129forward
CNT30511222Solanum tuberosumSolanum lycopersicum27.828.1291.48176forward

Expression of CNT3097205

Peptides detected in this lncRNA

>peptide 1 (36 aa)
MHVISSSCGFLSLLIFCDDYKSGNFFQHKQNWAGYI*

>peptide 2 (59 aa)
SFVLRRGEIKSTYTSSYCSIEESNVRIKIRTQDIVHEIILYKERENTNKRIINQVSHSK*

Sequence

>CNT3097205
TTTCTTTTGTACTAAGGAGGGGAGAAATCAAATCAACTTATACATCGTCTTACTGTAGTATTGAAGAATCAAATGTGAGAATAAAAATACGTACACAAGA
CATTGTTCATGAGATAATATTGTACAAAGAAAGAGAGAACACTAACAAAAGAATAATAAATCAAGTTTCTCACAGTAAATAAAAATAAAAAAGCAATTTT
TAGACACAGAGACAAATTGAAGTATACATATATATATATATATATATTCATCAAGCCTTTGGTCCTTCTCCGGACTCGGCACATAATTTTAGTACATTGG
ATCATCACGCCTTGGGTGCTTCTTCCACCTTAGTTGCAGGTGTCACGTCAGCAGCAGGTTCTTCATCCTTGTTTGATTCTCCAGCCTCCTCAATAACTAT
CTCCTTCTCCTTCACCGACGTGGCTGTTGCATGCACGTCATCAGCAGCAGCTGCGGGTTCCTCTCCCTTCTTATCTTCTGTGACGACTATAAAAGTGGAA
ACTTTTTCCAACACAAACAGAATTGGGCCGGATACATATGAAGGCCCAAAGTTTGAACTTGCTTCGCTAACAGCTTTTGATCCCGGAAATTCTTCAAGTA
CATACACCAAAATTTAGTCACAATCCCTTAAAT