Detailed information on CNT309700


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30375849Zea maysArabidopsis thaliana28.48.2186.9692forward
CNT30403349Zea maysBeta vulgaris23.7722.1385.7177forward
CNT30136078Zea maysLolium perenne28.735.9188.1793forward
CNT30650401Zea maysRosa chinensis25.319.3187.882forward
CNT30689645Zea maysTriticum urartu27.4720.9488.7689forward
CNT30367289Zea maysSorghum bicolor25.9314.7494.0584forward
CNT3022975Zea maysPopulus trichocarpa24.0711.6187.1878forward

Expression of CNT309700

Peptides detected in this lncRNA

>peptide 1 (76 aa)
PLSRPLIPSAAIGLRRNCWIPTTMLVPCAITVSYRYIRLGVLDGDHIGVHVNGVDDVVEVGVAHMCVDLSNKRSNQ*

>peptide 2 (44 aa)
PTVAATDPLRRHWTSPQLLDPYNDASPLRYHRKLPVHKTGSSGW*

Sequence

>CNT309700
CCCCACTGTCGCGGCCACTGATCCCCTCCGCCGCCATTGGACTTCGCCGCAACTGCTGGATCCCTACAACGATGCTAGTCCCCTGCGCTATCACCGTAAG
CTACCGGTACATAAGACTGGGAGTTCTGGATGGTGATCACATCGGCGTCCATGTCAATGGAGTGGATGATGTCGTTGAAGTTGGAGTAGCACATATGTGT
GTGGATCTATCCAACAAAAGGAGCAATCAGTAGAGGTTAATGGACCTATTTGCGATTGACCCGAAACACTAATTGTTTCACATCTTGCAGTCCTATTTTT
TGTCCTTCGATGCTCAATTTCTAT