« Back to Solanum tuberosum search


Detailed information on CNT3096981


BLAST search results

BLAST vs Swiss-Prot:
sp|P0CG84|UBI4P_NICSY, E-value = 0.0

BLAST vs NONCODE:
NONMEST001181, E-value = 3e-167

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30316435Solanum tuberosumCorylus avellana66.797.7884.11749forward
CNT30701438Solanum tuberosumQuercus lobata91.8170.6682.641031forward
CNT30629220Solanum tuberosumVigna unguiculata83.787.0484.36940forward
CNT30709517Solanum tuberosumGlycine max81.3998.3983.7914forward
CNT3086353Solanum tuberosumVigna radiata79.5241.6783.43893forward
CNT30623044Solanum tuberosumDaucus carota90.251.3785.781013forward

Expression of CNT3096981

Peptides detected in this lncRNA

>peptide 1 (44 aa)
MPSLSWILALTLSMVSELSTSRVMVFPVKVFTKICIPPRRRSTK*

>peptide 2 (44 aa)
MPSLSWILALTLSIVSELSTSRVMVFPVKVFTKICIPPRRRSTK*

>peptide 3 (31 aa)
MVSELSTSKVMVFPVKVFTKICIPPLSLNTR*

>peptide 4 (36 aa)
VNRLVHERNIATNRPKTPTATDSIKNHHRIGGQGAE*

>peptide 5 (31 aa)
MVSELSTSRVIVLPVKVFTKICIPPRRRRTK*

>peptide 6 (29 aa)
MSFHLPIACQQKSTFADLVGYPLCPESLP*

Sequence

>CNT3096981
AAGTAAACAGACTAGTTCATGAACGAAACATAGCAACAAACAGACCCAAGACACCAACAGCAACAGACTCCATCAAAAACCACCACAGAATCGGAGGACA
AGGTGCAGAGTAGACTCCTTTTGGATGTTGTAGTCCGCCAGAGTCCTTCCATCTTCAAGCTGCTTCCCTGCAAAGATCAGCCTCTGCTGGTCCGGTGGGA
TTCCCTCCTTGTCCTGAATCTTAGCCTTCACATTGTCAATGGTATCAGAACTCTCCACCTCCAAAGTGATGGTTTTCCCAGTCAAGGTCTTCACAAAAAT
CTGCATACCTCCCCTGAGCCTCAACACAAGATGAAGGGTCGATTCCTTCTGAATATTGTAATCGGCTAATGTCCTTCCATCTTCCAATTGCTTGCCAGCA
AAAATCAACCTTTGCTGATCTGGTGGGATACCCTCTTTGTCCTGAATCTTTGCCTTAACGTTGTCAATGGTGTCGGAGCTTTCCACCTCAAGGGTAATAG
TCTTGCCAGTCAAGGTCTTCACAAAGATTTGCATCCCACCGCGAAGACGAAGGACCAAGTGAAGGGTTGACTCCTTCTGGATGTTGTAATCAGCAAGGGT
CCGGCCATCCTCAAGCTGCTTTCCGGCAAAGATCAATCTTTGCTGGTCTGGGGGAATGCCTTCCTTGTCCTGGATCTTGGCTTTAACGTTGTCAATAGTG
TCGGAGCTTTCAACCTCAAGGGTGATGGTCTTTCCGGTCAAAGTCTTCACGAAAATTTGCATTCCACCACGAAGACGGAGCACCAAGTGAAGGGTTGATT
CCTTCTGGATGTTGTAATCAGCAAGGGTCCGGCCGTCCTCAAGCTGCTTGCCGGCAAAGATCGGCCTTTGCTGGTCTGGGGGAATGCCTTCCTTGTCCTG
GATCTTAGCCTTAACATTGTCAATGGTGTCGGAGCTTTCAACCTCAAGGGTGATGGTCTTTCCTGTCAAAGTCTTCACGAAAATTTGCATTCCACCACGA
AGACGGAGCACCAAGTGAAGAGTGGACTCTTTTTGAATGTTGTAATCAGCGAGGGTCCGGCCGTCTTCAAGTTGCTTGCCGGCAAAGATCAGCCTTTGCT
GGTCTGGGGGAATGCCTTCCTTG