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Detailed information on CNT3096867


BLAST search results

BLAST vs Swiss-Prot:
sp|P0CH33|UBQ11_ARATH, E-value = 5e-160

BLAST vs NONCODE:
NONMEST001181, E-value = 3e-132

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30406245Solanum tuberosumBeta vulgaris74.1199.2384.39647forward
CNT30214147Solanum tuberosumHelianthus annuus74.4680.8583.85650forward
CNT30723701Solanum tuberosumLupinus angustifolius78.4739.0185.26685forward

Expression of CNT3096867

Peptides detected in this lncRNA

>peptide 1 (69 aa)
KTKNATILHSNRAKFLFIHINDSSTTHKKGNITKLKPEKSGKHLSTKGEENTVTKAINSQKPPRRRRTR*

>peptide 2 (57 aa)
MSSQKSAYHLADEGQGGGWTPSEYCSQQEYDHPQVAFQQKSTFAGLEECPPCPEFLP*

>peptide 3 (37 aa)
MVSELSTSRVMVFPVNVFTKICIPPRRRRTRWRVDSF*

Sequence

>CNT3096867
CGAAAACCAAGAATGCAACCATATTACATAGTAACAGAGCTAAATTTTTATTTATTCACATAAACGACAGTTCAACCACACATAAGAAAGGCAACATCAC
AAAACTAAAACCAGAAAAGTCTGGAAAACATCTTTCGACCAAAGGAGAAGAAAACACAGTTACAAAAGCAATAAATTCTCAAAAGCCACCACGGAGACGA
AGAACAAGGTGAAGAGTTGACTCTTTCTGAATGTTATAGTCAGCAAGGGTGCGACCATCCTCCAGCTGCTTACCAGCAAAAATCAACCTCTGCTGGTCTG
GTGGGATGCCTTCCTTATCTTGAATTTTAGCCTTGACATTGTCGATGGTGTCAGAACTCTCAACCTCAAGGGTGATGGTCTTCCCTGTCAATGTCTTCAC
AAAAATCTGCATACCACCTCGCAGACGAAGGACAAGGTGGAGGGTGGACTCCTTCTGAATATTGTAGTCAGCAAGAGTACGACCATCCTCAAGTTGCTTT
CCAGCAAAAATCAACCTTTGCTGGTCTGGAGGAATGCCCTCCTTGTCCTGAATTTTTGCCTTAACATTGTCAATAGTGTCTGAGCTTTCAACCTCGAGGG
TAATAGTCTTTCCAGTCAAGGTTTTCACAAAGATCTGCATGCCACCACGCAGACGAAGGACAAGGTGGAGGGTGGACTCCTTCTGGATGTTATAGTCTGC
AAGAGTTCTACCGTCCTCTAATTGCTTTCCAGCAAAGATCAGCCTTTGCTGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTTTGCCTTAACATTATCG
ATTGTGTCAGAACTCTCAACCTCGAGAGTTATGGTCTTGCCAGTAAGGGTCTTAACAAAGATTTGCATCTATA