Detailed information on CNT3096753


BLAST search results

BLAST vs Swiss-Prot:
sp|P69322|UBIQP_PEA, E-value = 0.0

BLAST vs NONCODE:
NONMEST001181, E-value = 6e-165

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30311148Solanum tuberosumCamelina sativa78.6469.482.95880forward

Expression of CNT3096753

Peptides detected in this lncRNA

>peptide 1 (53 aa)
FIHINDSSTTHKKGNITKLKPEKSGKHLSTKGEENTVTKAINSQKPPRRRRTR*

>peptide 2 (55 aa)
MSSQKSAYHPLGAAPNGELIPFECCNLLESFHPQAVSQQKSTSAGQVGCLPYLEF*

>peptide 3 (37 aa)
MVSELSTSRVMVFPVNVFTKICIPPRRRRTRWRVDSF*

>peptide 4 (37 aa)
MVSELSTSRVIVFPVNVFTKICIPPLRRSTKWRVDSF*

>peptide 5 (57 aa)
MSSQKSAYHLADEGQGGGWTPSEYCSQQEYDHPQVAFQQKSTFAGLEECPPCPEFLP*

Sequence

>CNT3096753
TTTATTCACATAAACGACAGTTCAACCACACATAAGAAAGGCAACATCACAAAACTAAAACCAGAAAAGTCTGGAAAACATCTTTCGACCAAAGGAGAAG
AAAACACAGTTACAAAAGCAATAAATTCTCAAAAGCCACCACGGAGACGAAGAACAAGGTAATCGTCTTTCCAGTAAGTGTCTTGACAAAGATCTGCATT
CCTCCTCTCAAACGGAGCACCAAATGGAGTGTGGACTCTTTCTGGATATTGTAATCAGCAAGAGTCCTACCATCCTCAAGCTGCTTGCCAGCAAAAATTA
AACGCTGCTGGTCTGGTGGAATCCCTTCTTTGTCTTGGATCTTTGCCTTCACATTATCAATGGTGTCTGAACTTTCTACCTCCAGGGTGATTGTCTTCCC
AGTCAATGTCTTCACAAAAATCTGCATACCACCCCTTAGGCGCAGCACCAAATGGAGAGTTGATTCCTTTTGAATGTTGTAATCTGCTAGAGTCCTTCCA
TCCTCAAGCTGTTTCCCAGCAAAAATCAACCTCTGCTGGTCAGGTGGGATGCCTTCCTTATCTTGAATTTTAGCCTTGACATTGTCGATGGTGTCAGAAC
TCTCAACCTCAAGGGTGATGGTCTTCCCTGTCAATGTCTTCACAAAAATCTGCATACCACCTCGCAGACGAAGGACAAGGTGGAGGGTGGACTCCTTCTG
AATATTGTAGTCAGCAAGAGTACGACCATCCTCAAGTTGCTTTCCAGCAAAAATCAACCTTTGCTGGTCTGGAGGAATGCCCTCCTTGTCCTGAATTTTT
GCCTTAACATTGTCAATAGTGTCTGAGCTTTCAACCTCGAGGGTAATAGTCTTTCCAGTCAAGGTTTTCACAAAGATCTGCATACCACCACGCAAACGAA
GGACAAGGTGGAGGGTGGACTCCTTCTGGATGTTATAGTCTGCAAGAGTTCTACCGTCCTCTAATTGCTTTCCAGCAAAGATCAGCCTTTGCTGATCAGG
AGGAATTCCTTCCTTGTCTTGAATCTTTGCCTTAACATTATCGATTGTGTCAGAACTCTCAACCTCGAGAGTTATGGTCTTGCCAGTAAGGGTCTTAACA
AAGATTTGCATCTATAATT