Detailed information on CNT3096726


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONVVIT002763, E-value = 2e-47

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30535492Solanum tuberosumEucalyptus grandis10073.3784.39237forward
CNT30375849Solanum tuberosumArabidopsis thaliana97.4720.6287.01231forward
CNT30403132Solanum tuberosumBeta vulgaris92.8368.5482.73220forward
CNT30194314Solanum tuberosumSecale cereale25.3224.6986.6760reverse complement
CNT30137932Solanum tuberosumLolium perenne60.7657.1488.19144forward
CNT30650401Solanum tuberosumRosa chinensis94.9425.5485.78225forward
CNT30717191Solanum tuberosumMalus domestica golden18.9922.3995.5645forward
CNT30624889Solanum tuberosumDaucus carota77.2248.1689.07183forward
CNT30721902Solanum tuberosumTriticum spelta26.5831.0390.4863forward
CNT3024604Solanum tuberosumPopulus trichocarpa84.3920.683.5200forward
CNT30604869Solanum tuberosumOryza punctata62.0356.3287.07147forward

Expression of CNT3096726

Peptides detected in this lncRNA

>peptide 1 (29 aa)
VISDKRPVENGDRASKHSLHWPLGHLLSF*

Sequence

>CNT3096726
GTCATTTCTGACAAAAGACCAGTTGAGAATGGTGACAGGGCCAGTAAGCATTCCCTTCATTGGCCTCTTGGTCATCTCTTGAGCTTTTGAGGACCAGAAG
ACGGTCATTGCCTTTGGGCGGCTCACATCACCATAGATGATTGGTGGCTTCACACATCGAGATCCATAAGATTGAACCCATCCATTGGCAGTGAAAGCAA
AACCAGAGAGCTGCTCTCCGAAGTACTCAACCATATC