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Detailed information on CNT3096662


BLAST search results

BLAST vs Swiss-Prot:
sp|Q43163|CHSB_SOLTU, E-value = 2e-135

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30700733Solanum tuberosumQuercus lobata41.3489.5577.98377forward
CNT30156253Solanum tuberosumPistacia vera23.2527.2180.19212forward
CNT3030385Solanum tuberosumTheobroma cacao10.0923.0684.7892forward
CNT3022840Solanum tuberosumPopulus trichocarpa46.643.6378.59425forward

Expression of CNT3096662

Peptides detected in this lncRNA

>peptide 1 (35 aa)
MFFEISPGTSLSKWNVSPTSRRCPSIAPSLSGTRV*

>peptide 2 (37 aa)
YKPSPLSSNTVKNNSLNCKPRPKSKKDTPFKPFTSSS*

Sequence

>CNT3096662
TATAAGCCCAGCCCACTAAGTAGCAACACTGTGAAGAACAACAGTCTAAATTGTAAGCCCAGGCCCAAATCCAAAAAGGACACCCCATTCAAGCCCTTCA
CCAGTAGTTCCTAGGCCTTCTTTTGTAGAGGCCTTTCTCATTTCATCCAAAATAAACAACACACAAGCACTTGACATATTGCCATAGTTACTCAATACTT
CTCTTGAAACCCTAAGTTTCTCAGGCTTTAGGCCCAATTTTAATTCAACTTGGTCCAACATCGCAGGCCCAAATCCAAAAAGGACACCCCATTCAAGCCC
TTCACCTGTAGTTCCTAGGCCTTCTTTTGTAGAGGCCTTTCTCATTTCATCCAAAATAAACAACACACAAGCACTTGACATATTGCCATAGTTACTCAAT
ACTTCTCTTGTAGCCCTAAGTTTCTCTTGCTTTAGGCCCAACTTTAATTCAACTTGGTCCAAAATCGCAGGCCCACCCGGGTGAGCGATCCAAAATAGAG
AGTTCCAGTCAGATATACCTAGAGGTTGGAATGCTTCTAGAAGGCTCTTCTCGATGTTTTTCGAGATAAGCCCAGGAACATCCTTGAGTAAGTGGAACGT
AAGCCCAACCTCACGGAGATGTCCATCGATAGCACCTTCGCTATCGGGGACAAGAGTTTGAGCTGCTGAGACGAGTTCGAATAAAGGCCTTTCAACCCCT
ATAATTGGGTCCGAACCCATAATGATAGCGGCCGCCCCATCACCAAAAAGGGCTTGGCCTACCAGGCTATCTAAGTGAGATTCACTGGGTCCACGGAATG
TGACTGCAGTGATCTCAGAGCAAACAACAAGGACTCTAGCGCCCTTGTTGTTCTCAGCCAAGTCCTTGGCTAGCCGGAGAACTGTTCCCCCGGCAAAGCA
ACCTTGTTGGTA