« Back to Solanum tuberosum search


Detailed information on CNT3096554


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30503735Solanum tuberosumNicotiana attenuata98.3598.3587.92298forward
CNT30508652Solanum tuberosumSolanum lycopersicum100.3310091.78304forward

Expression of CNT3096554

Peptides detected in this lncRNA

>peptide 1 (76 aa)
MVGLGGLISGLPCPSTELGLVVQSKEWASGLLKRGRLREAGFTEQRTVSALCSGRITSRCLPSPVTPDGLLQLNHHF

>peptide 2 (61 aa)
PGSVTWACNPSGGISVVECWAVPDGWAWWANFWPALSKHRVGPCGPIEGMGFWAPKAGQTA*

Sequence

>CNT3096554
GCCGGGCTCAGTAACATGGGCTTGTAACCCAAGTGGGGGCATTAGTGTGGTGGAATGTTGGGCTGTTCCAGATGGTTGGGCTTGGTGGGCTAATTTCTGG
CCTGCCCTGTCCAAGCACAGAGTTGGGCCTTGTGGTCCAATCGAAGGAATGGGCTTCTGGGCTCCTAAAGCGGGGCAGACTGCGTGAGGCTGGTTTCACA
GAACAACGAACAGTTTCCGCTCTGTGCAGTGGAAGGATAACGAGTCGGTGCCTTCCAAGTCCAGTAACGCCTGATGGGCTGCTCCAACTAAACCACCATT
TTT