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Detailed information on CNT3096482


BLAST search results

BLAST vs Swiss-Prot:
sp|P31425|PAL1_SOLTU, E-value = 5e-65

BLAST vs NONCODE:
NONVVIT002503, E-value = 4e-26

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30628474Solanum tuberosumVigna unguiculata93.2187.6780.34590forward

Expression of CNT3096482

Peptides detected in this lncRNA

>peptide 1 (51 aa)
MELLSCLDIRAAIQNVFHNSSSLNLTRVMLQLVCQIVSEFRLPIHHFSENR*

>peptide 2 (42 aa)
IGVPWKLPPCKALFLETSINGLSFTELISLSIILVAARMTSI*

>peptide 3 (42 aa)
MELLSFLNIRAAIQNVFHNSSSLNLTRVMLQLVCQIRSCFGF*

>peptide 4 (35 aa)
MLESYRTIDAIPEPTAVPFTSASPSLGCNSKNPPLT

Sequence

>CNT3096482
AATAGGGGTTCCTTGGAAGTTGCCACCGTGCAAGGCCTTGTTTCTTGAAACATCGATTAATGGATTGTCGTTCACTGAGTTAATCTCCCTCTCAATCATC
TTAGTTGCTGCACGTATGACTTCAATTTGAGGGCCAAGCCATTGTGGAGCTGTTCGGAGAGCATAACGATCTTGCTTTGGTTTTTGAAGAGGATCCATTT
CATGGAGCTTCTGAGCTTCCTTAACATAAGAGCTGCCATCCAAAATGTGTTCCATAATAGCAGCAGCCTCAATCTGACCAGGGTGATGCTTCAACTTGTG
TGTCAAATACGATCTTGCTTTGGTTTTTGAAGAGGATCCATTTCATGGAGCTTCTGAGCTGCCTTGACATAAGAGCTGCCATCCAAAATGTGTTCCATAA
TAGCAGCAGCCTCAATCTGACCAGGGTGATGCTTCAACTTGTGTGTCAAATAGTCAGTGAATTCAGGCTTCCCATTCATCACTTCAGCGAAAATCGCTGA
TAAAACTTCAGACATAACAGCAAGAATGTTGGAGTCATACAGGACAATTGATGCCATACCAGAACCAACTGCTGTACCATTCACAAGTGCAAGTCCTTCC
TTAGGCTGCAACTCGAAAAATCCACCACTAACA