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Detailed information on CNT3096393


BLAST search results

BLAST vs Swiss-Prot:
sp|Q43163|CHSB_SOLTU, E-value = 1e-107

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30381108Solanum tuberosumManihot esculenta29.6831.5482.39176forward
CNT30507146Solanum tuberosumNicotiana attenuata77.2343.0584.5458forward
CNT30609893Solanum tuberosumGossypium raimondii32.2139.6382.2191forward

Expression of CNT3096393

Peptides detected in this lncRNA

>peptide 1 (35 aa)
MFFEISPGTSLSKWNVSPTSRRCPSIAPSLSGTRV*

Sequence

>CNT3096393
CAAATTGTAGAGGCCCATAGTATAAGCCCAGCCCACTAAGTAGCAACACTGTGAAGAACAACAGTCTAAATTGTAAGCCCAGGCCCAAATCCAAAAAGGA
CACCCCATTCAAGCCCTTCACCAGTAGTTCCTAGGCCTTCTTTTGTAGAGGCCTTTCTCATTTCATCCAAAATAAACAACACACAAGCACTTGACATATT
GCCATAGTTACTCAATACTTCTCTTGAAACCCTAAGTTTCTCAGGCTTTAGGCCCAATTTTAATTCAACTTGGTCCAACATCGCAGGTCCACCTGGGTGA
GTAATCCAAAATAGAGAGTTCCAATCAGATATACCTAGAGGTTGGAATGCTTCTAGAAGGCTCTTCTCGATGTTTTTCGAGATAAGCCCAGGAACATCCT
TGAGTAAGTGGAACGTAAGCCCAACCTCACGGAGATGTCCATCGATAGCACCTTCGCTATCGGGGACAAGAGTTTGAGCTGCTGAGACGAGTTCGAATAA
AGGCCTTTCAACCCCTATAATTGGGTCCGAACCCATAATGATAGCGGCCGCCCCATCACCAAAAAGGGCTTGGCCTACCAGGCTATCTAAGTG