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Detailed information on CNT3096327


BLAST search results

BLAST vs Swiss-Prot:
sp|P68172|SAHH_NICSY, E-value = 4e-113

BLAST vs NONCODE:
NONGMAT001730, E-value = 7e-22

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30639595Solanum tuberosumNymphaea colorata18.2430.7280145forward
CNT30585997Solanum tuberosumMusa acuminata11.1935.1884.2789forward
CNT30511017Solanum tuberosumSolanum lycopersicum74.8499.8394.62595forward
CNT30144739Solanum tuberosumMedicago truncatula32.8356.2580.46261forward
CNT30659902Solanum tuberosumTriticum dicoccoides13.4634.7484.11107forward
CNT30611972Solanum tuberosumArabis alpina8.5528.5797.0668forward
CNT30681317Solanum tuberosumTriticum urartu13.4621.8483.18107forward
CNT30720265Solanum tuberosumTriticum spelta13.4639.3484.11107forward
CNT30365159Solanum tuberosumSorghum bicolor17.7441.8481.56141forward
CNT30358619Solanum tuberosumLactuca sativa26.2945.8382.78209forward
CNT30570728Solanum tuberosumVitis vinifera25.1635.7881.5200forward
CNT30645006Solanum tuberosumCannabis sativa76.2373.6382.51606forward
CNT3021984Solanum tuberosumPopulus trichocarpa79.8729.6982.05635forward
CNT3065844Solanum tuberosumSelaginella moellendorffii10.1923.2188.8981forward

Expression of CNT3096327

Peptides detected in this lncRNA

>peptide 1 (58 aa)
MNQECSITTIINNQIRTTTWTPIKCPLSTPPVLLQSLTFPGKNSSTVTCNGCCSMILS*

>peptide 2 (39 aa)
MLQEHHLTSAPKAVRGFNKDSSLDSHMQRSSDLCTFEGL*

>peptide 3 (71 aa)
MRPGISTSASSISSLPKSAWDMSFTLYSRPEVVFSTSRAMGREMEWFEMRSDRLFSSSFGVFQGRRRSVARN

Sequence

>CNT3096327
CAGAGTCATTAACATTAATAGCAGGGAATAGTAAAGTTCCATTAGCCTGCATTTGGTAAAGCCTCTTAACACCAGTGGTAGTTTCCTCAGAAACACCAAC
AAGTCTCTCCTTCATCTTAGTGTACCTTAAAGGATCAGTCTTTAAACTCTCCTTAATAATAGTAAGCACAAGTTGAAACTCAACGTTATCAGTAGAAGTA
GGATCTGGGATTGCCCCATTCTTAGCAAACTCCTCCTCTGCCTTAACACCCTCATGAATCAAGAGTGTAGCATCACCACCATCATCAACAATCAGATCAG
GACCACCACCTGGACCCCAATCAAGTGCCCTCTCAGTACACCACCAGTACTCCTGCAAAGTCTCACCTTTCCAGGCAAAAACAGCAGCACTGTCACGTGC
AATGGCTGCTGCAGCATGATCCTGAGTTGAGAAGATGTTGCAAGAACACCATCTAACTTCAGCACCCAAAGCAGTTAGGGGTTTCAATAAGGACAGCAGT
TTGGATAGTCATATGCAGAGATCCAGTGATCTTTGCACCTTTGAAGGGCTGTGAAGGGCCAAATTCAGCACGGGAAGCCATGAGACCAGGCATTTCGACT
TCGGCAAGCTCGATTTCGAGCCTGCCGAAGTCAGCCTGGGACATGTCCTTCACCTTGTACTCGCGGCCAGAAGTGGTCTTCTCAACGAGTAGAGCCATGG
GTAGAGAAATGGAATGGTTTGAGATGAGATCTGATAGGCTTTTCTCTTCTTCCTTTGGGGTTTTTCAGGGAAGAAGAAGAAGTGTGGCAAGAAAT