Detailed information on CNT3096221


BLAST search results

BLAST vs Swiss-Prot:
sp|P25872|PAL1_TOBAC, E-value = 0.0

BLAST vs NONCODE:
NONSTUT002995, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30144087Solanum tuberosumMedicago truncatula20.6788.3980.81297forward

Expression of CNT3096221

Peptides detected in this lncRNA

>peptide 1 (61 aa)
MVSHWICQKLKFRAVRSHCNFSSLESIVQAWIPSCCEIRWQPIVVIVVDKFRKLGKHQFPN*

>peptide 2 (67 aa)
MTARMLESNRTIDAIPEPTAVPFTSASPSLGCNSKNPPLTPAAQNASSALSFSPFGPTALELGLPVSK

>peptide 3 (46 aa)
METPIGVPWKLPPCKALFLETSINGLSFTELISLSIILVAARMTSI*

>peptide 4 (52 aa)
MELLSCLDIRAAIQNVFHNSSSLNLTRVMLQLVCQIVSEFGLSIHHFSENRR*

>peptide 5 (36 aa)
TYSSLREFKHSLKLTKKDVSSQHIMIVIHHKSKKRI*

>peptide 6 (37 aa)
MSTASAVFLAEIKPNEFTSWLCCSALWTWLVTGFAKN*

>peptide 7 (35 aa)
MTLASRCQQPQRFSLLRLSPMNSHLGCVAQHFGHG*

>peptide 8 (32 aa)
MKFTISTHCQSSLSYLAHCVLDSIPQVFLQMP*

Sequence

>CNT3096221
GACATATTCATCTTTAAGAGAGTTTAAACACTCTCTCAAGTTAACCAAAAAAGATGTAAGTTCACAACATATTATGATAGTAATTCACCATAAGAGTAAA
AAAAGAATCTGAAAAATAGCACTAGACAAGCATTAACAACTGGTCCTTTATCTGGCAAACATTTAGCAGATTGGAAGAGGAGCACCATTCCAGCTCTTGA
GACACTCCAACAATGGATCAATAATCTGTCCATTGCACATTGCTGTGAACACCTTGTCAATCTCCTCACCGGGCGATCGAACTTTTTCACCTGTCAACAC
TTCTGCATCAAAGGGTAGGTTGAACTGCAGGGATCATCAGCATAGGCAAACACGTATTCCCTGTCCACGACTCGAAGCAATTCCTTCTCGCAGAATCTTG
CAGGATGAAGTTCACCATTAGCACCCATTGTCAAAGTTCTCTTAGCTACTTGGCTCACTGTGTTCTTGACAGCATTCCTCAAGTTTTCCTCCAAATGCCT
TAAGTCAATAGCTTGGCAAAGCGCCACGAGATAGGTTGATGACATTAGCTTCAAGATGTCAACAGCCTCAGCGGTTTTCCTTGCTGAGATTAAGCCCAAT
GAATTCACATCTTGGTTGTGTTGCTCAGCACTTTGGACATGGTTAGTCACTGGATTTGCCAAAAATTGAAGTTCCGAGCAGTAAGAAGCCATTGCAATTT
CAGCTCCCTTGAGTCCATAGTCCAAGCTTGGATTCCTTCCTGCTGTGAGATTAGATGGCAGCCCATTGTTGTAATAGTCGTTGACAAGTTCCGAAAATTG
GGCAAACATCAATTTCCCAATTGATGCAAGGGCCAATCTTGTATTATCCATGGAGACACCAATAGGGGTACCTTGGAAGTTGCCACCATGTAAGGCCTTG
TTTCTTGAAACGTCGATCAATGGGTTGTCGTTCACTGAGTTAATCTCCCTCTCGATCATCTTAGTTGCTGCACGGATGACTTCAATTTGAGGGCCAAGCC
ACTGTGGAGATGTTCGGAGAGCATAACGATCTTGCTTTGGTTTTTGAAGAGGATCCCATTTCATGGAGCTTCTGAGCTGCCTTGACATAAGAGCTGCCAT
CCAAAATGTGTTCCATAATAGCAGCAGCCTCAATCTGACCAGGGTGATGCTTCAACTTGTGTGTCAAATAGTCAGTGAATTCGGGCTTTCCATTCATCAC
TTCAGCGAAAATCGCCGATAAAACTTCAGACATGACAGCAAGAATGTTGGAATCAAACAGGACCATTGATGCCATACCAGAACCAACTGCTGTACCATTC
ACAAGTGCAAGTCCTTCTTTAGGCTGCAACTCGAAAAATCCACCACTAACACCAGCCGCGCAGAACGCTTCCTCAGCATTAAGTTTCTCACCATTTGGTC
CAACAGCCTTGGAGTTAGGCCTGCCAGTGAGCAAACC