« Back to Solanum tuberosum search


Detailed information on CNT3096133


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30379331Solanum tuberosumManihot esculenta23.4323.4387.3271forward
CNT30406606Solanum tuberosumBeta vulgaris21.7821.3690.9166forward
CNT30506278Solanum tuberosumNicotiana attenuata10010088.12303forward
CNT3044357Solanum tuberosumPrunus dulcis23.4323.3690.1471forward
CNT30235726Solanum tuberosumBrassica oleracea22.1121.989.5567forward
CNT30510805Solanum tuberosumSolanum lycopersicum100.6610090.82305forward
CNT30260145Solanum tuberosumBrassica rapa27.7227.8186.984forward
CNT30647270Solanum tuberosumRosa chinensis29.729.3287.7890forward
CNT30154412Solanum tuberosumPrunus persica23.4323.2888.7371forward
CNT3026903Solanum tuberosumPopulus trichocarpa20.7920.7290.4863forward

Expression of CNT3096133

Peptides detected in this lncRNA

>peptide 1 (45 aa)
MECWAVPDGWVWWASVWPALSKRRVGSRGSVERMGCLIPKEGWTA*

>peptide 2 (29 aa)
MVGFGGLVSGLPCPSAELDHVAQLKEWAA*

Sequence

>CNT3096133
GCCGAGCTCAGTAGCGTGAGCTTGTAACCCAAGTGGGGGCATTAGTGTGATGGAATGTTGGGCTGTCCCAGATGGTTGGGTTTGGTGGGCTAGTGTCTGG
CCTGCCCTGTCCAAGCGCAGAGTTGGATCACGTGGCTCAGTTGAAAGAATGGGCTGCTTGATTCCTAAAGAGGGGTGGACTGCGTGAGGCTGGTTTCACA
GAGCAACGAACAGCTCCCGCTCTGTGCAGTGGAAGGATAACGGGTCAGTGCTTACCGAGTCCAGTAACGCCTGATGGGCTGCTCCAATTAAACCACCACT
TTT