Detailed information on CNT309612


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30673696Zea maysSetaria viridis20.8335.8393.88196forward
CNT30183892Zea maysSecale cereale17.5331.1987.88165forward
CNT30307914Zea maysTriticum aestivum17.5340.6487.88165forward
CNT30226503Zea maysHordeum vulgare17.2228.8887.04162forward
CNT30400060Zea maysTriticum turgidum17.5331.3187.88165forward
CNT30589124Zea maysMusa acuminata9.3528.9594.3288forward
CNT30442646Zea maysAegilops tauschii21.0416.8191.92198forward
CNT30244624Zea maysAvena sativa18.671.7286.86175forward
CNT30669298Zea maysTriticum dicoccoides21.0422.390.4198forward
CNT30344604Zea maysEragrostis tef19.5520.3395.11184forward
CNT30364335Zea maysSorghum bicolor20.6222.2593.3194forward
CNT30148497Zea maysBrachypodium distachyon9.9932.396.8194forward
CNT30576846Zea maysOryza barthii10.226.389.5896forward
CNT30580511Zea maysEchinochloa crusgalli20.350.494.76191forward
CNT30497331Zea maysDigitaria exilis19.4520.1892.9183forward

Expression of CNT309612

Peptides detected in this lncRNA

>peptide 1 (65 aa)
MMMSPMLLCHGSARWEARFSSGPVRGLPAGDGRPLLRLHPVAQAQSFRHQDPGDGKHGPAAVVHL*

>peptide 2 (64 aa)
MVTRPEVVALAQNGARRPDRDDGASRLGTPTALQLLSPLDDAITIAASADPSWSGREGGRTSGV*

>peptide 3 (53 aa)
MAQRQWYTSDSLNRSKFSGTVARPSGSKPKSLYVNTRQRDRESRARRCHSISR*

Sequence

>CNT309612
AAAAACATCGTGTCTAGCTCATGAAATACAATACTTTGTAGTTATCAAAGGTCTCGTATGTATTTTCTCCGTTTTGAGCTAAATTTCCCCTGGTTAGGCT
CAGAAATAACCTTGGGATTCAGCTAACAAACCAGTTTATATTTGATACAGACAAGACTACAAGAGTAGCCGCTACTTAATAACATAAGCTTTACATTACG
AGGGTTTAATTTCCGGGCGGGAAGTCACCGTCGTCGCTCGTTGTACAGGCAGGGCCTAGTCGTACACAGGAAACAGCAACCAGCAGCTGAGCTGAGCTCA
AGGGGAGATTGATCTGGGGATGATGATGTCGCCGATGTTGTTGTGCCACGGGTCGGCGAGGTGGGAGGCGAGGTTCTCCAGCGGGCCGGTACGTGGCCTG
CCCGCCGGGGACGGCCGCCCACTCCTGCGCCTTCACCCAGTTGCCCAGGCCCAGAGCTTCCGGCACCAGGATCCCGGGGACGGCAAGCATGGCCCAGCGG
CAGTGGTACACCTCTGACTCCTTGAACCGCTCGAAGTTCTCCGGCACGGTCGCGAGGCCCAGCGGATCGAAGCCGAAGTCCCTGTATGTCAACACTCGTC
AGAGAGACAGGGAGAGCAGAGCACGCCGTTGTCACTCGATCAGTCGCTAGCTAGCCTGCTTCTGCTTGCTTACCCGGGAGAGGAGCCGTCGAGGTGGGCA
GGGCGTGGCTGGCCGGGCATCCACTCCGCGGACATGGTGACGCGGCCAGAGGTGGTGGCGTTGGCGCAGAACGGCGCCAGGCGGCCGGACCGGGACGACG
GCGCCAGCAGGCTGGGCACGCCCACGGCGCTGCAGCTCCTCAGCCCGCTCGACGACGCCATCACCATTGCTGCTTCCGCTGATCCTAGCTGGTCAGGCAG
AGAGGGAGGGAGAACAAGTGGCGTTTGAGAGCCGAGTAGAA