Detailed information on CNT3095955


BLAST search results

BLAST vs Swiss-Prot:
sp|Q40158|MT2B_SOLLC, E-value = 5e-39

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30503289Solanum tuberosumNicotiana attenuata21.8615.4292.55188forward

Expression of CNT3095955

Peptides detected in this lncRNA

>peptide 1 (74 aa)
PPNGFRTFANTLPSPSPPYGIYTFAYTLCSPISRLKRFTIVLQPRVYHKHTQKRGNINKEVLELVETTTTHFQT*

>peptide 2 (43 aa)
MQRCSCYTNHINGYLYTPLLYFLLQGKKEHIFFPCFNTHTLKH*

>peptide 3 (39 aa)
HPMDFAHLQTRYLLQAHPMEFTHLRTLYALQYQDLKDLL*

>peptide 4 (35 aa)
PTQWISHICKHATFSKPTLWNLHICVHFMLSNIKT*

>peptide 5 (35 aa)
MAPKLVFSGPTPSTKVSVRDTHFSTIFFNHRRLTP*

>peptide 6 (29 aa)
MVTYTLHYYISYYREKKNTYFFPVSTHTH*

Sequence

>CNT3095955
CCCACCCAATGGATTTCGCACATTTGCAAACACGCTACCTTCTCCAAGCCCACCCTATGGAATTTACACATTTGCGTACACTTTATGCTCTCCAATATCA
AGACTTAAAAGATTTACTATAGTTTTGCAGCCTAGAGTGTATCATAAACACACACAAAAAAGAGGAAACATTAACAAGGAAGTACTTGAATTAGTTGAAA
CCACAACAACACATTTCCAAACTTAGATGCTAAAATTACCAGATGCAGAGATGCTCATGTTACACAAACCATATTAATGGTTACTTATACACTCCATTAC
TATATTTCTTATTACAGGGAAAAAAAGAACACATATTTTTTCCCTGTTTCAACACACACACACTAAAACACTAGAGAAAAACACATTTTTCAACTATTTT
CTTCAACCATAAAAGGCTAACACCATGATCTCTGCTCTGTTTTAACTATAGTTTGTTCACTTAGAACAAGTGCAAGGGTTGCACTTGCAGTCAGATCCAC
ATTTGCAGCCATTCTCAGCAACAGGGGATTCACCCATCTCCATGGCGCCGAAGCTTGTCTTCTCAGGTCCCACCCCAAGCACCAAAGTCTCGGTGAGAGA
CACACATTTTTCAACTATTTTCTTCAACCATAGAAGGCTAACACCATGATCTCTGCTCTGTTTTAACTATACTTTGTTCACTTAGAACAAGTGCAAGGGT
TGCACTTGCAGTCAGATCCACATTTGCAGCCATTCTCAGCAACAGGGGATTCACCCATCTCCATGGCGCCGAAGCTTGTCTTCTCAGGTCCCACCCCAAG
CACCAAAGTCTCGGTGGTTGTGATGCTTTCGGTGTAGCTCATGTCTGGGTACATCTTGCA