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Detailed information on CNT3094992


BLAST search results

BLAST vs Swiss-Prot:
sp|P0CG84|UBI4P_NICSY, E-value = 0.0

BLAST vs NONCODE:
NONMEST001181, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30641251Solanum tuberosumNymphaea colorata78.3551.5583.77912forward
CNT30528977Solanum tuberosumEucalyptus grandis78.2667.9985.07911forward
CNT30315749Solanum tuberosumCorylus avellana58.9342.2486.88686forward
CNT30546269Solanum tuberosumIpomoea triloba70.5391.4383.8821forward
CNT30701241Solanum tuberosumQuercus lobata75.9586.1683.71884forward
CNT30376617Solanum tuberosumArabidopsis thaliana68.0473.8184.34792forward
CNT30274489Solanum tuberosumChenopodium quinoa78.4474.5986.2913forward
CNT30727227Solanum tuberosumCorchorus capsularis59.2860.0585.51690forward
CNT30379426Solanum tuberosumManihot esculenta74.4874.8785.47867forward
CNT30526024Solanum tuberosumPhaseolus vulgaris78.8769.3985.19918forward
CNT30630785Solanum tuberosumVigna unguiculata59.1180.6686.48688forward
CNT30506305Solanum tuberosumNicotiana attenuata59.0272.8587.77687forward
CNT30156153Solanum tuberosumPistacia vera75.9576.7484.62884forward
CNT30635990Solanum tuberosumCapsicum annuum79.5544.6786.29926forward
CNT3087979Solanum tuberosumVigna radiata59.2873.3386.38690forward
CNT30540600Solanum tuberosumBrassica napus78.2653.482.99911forward
CNT30312399Solanum tuberosumCamelina sativa79.2170.684.16922forward
CNT3073349Solanum tuberosumBrassica juncea78.1881.8384.07910forward
CNT30264722Solanum tuberosumBrassica rapa78.8786.7783.77918forward
CNT30605652Solanum tuberosumGossypium raimondii78.5292.782.93914forward
CNT30229013Solanum tuberosumAnanas comosus78.2657.7783.86911forward
CNT30217449Solanum tuberosumKalanchoe fedtschenkoi78.2660.3783.97911forward
CNT30652285Solanum tuberosumRosa chinensis78.5275.186.21914forward
CNT30477817Solanum tuberosumArabidopsis halleri79.2186.1783.19922forward
CNT30359535Solanum tuberosumLactuca sativa78.0153.7683.15908forward
CNT30423866Solanum tuberosumPapaver somniferum7568.2684.42873forward
CNT30704857Solanum tuberosumPrunus avium79.2158.3986.44922forward
CNT30321313Solanum tuberosumAsparagus officinalis74.7466.3684.83870forward
CNT30174646Solanum tuberosumVigna angularis77.4186.4785.57901forward
CNT30111644Solanum tuberosumFicus carica79.3864.8484.96924forward
CNT30726149Solanum tuberosumLupinus angustifolius78.2647.8584.08911forward
CNT3050995Solanum tuberosumCucumis sativus79.4783.1184.11925forward

Expression of CNT3094992

Peptides detected in this lncRNA

>peptide 1 (40 aa)
MVSELSTSRVMVFPVRVLTKICIPPRRRRTRWRVDSFWML*

>peptide 2 (40 aa)
MVSELSTSKVMVFPVRVLTKICIPPRRRRTKCRVDSFWML*

>peptide 3 (38 aa)
TQTAIRKETRNWMFIKTPLLFTNEKQKGTESENTLMIL*

>peptide 4 (31 aa)
MVSELSTSKVMVFPVKVFTKICIPPLSLSTK*

>peptide 5 (86 aa)
MGNRHSQTTRQPTTGNLKTTTETEDKVQSGLLLDIVVGKGASIFKLLTSKDQPLLVWWDPLLVLNLSFHIVDGVRTLHLQGDGLPG*

>peptide 6 (44 aa)
MPSLSWILALTLSMVSELSTSRVIVLPVRVLTKICIPPQKFEGN*

>peptide 7 (73 aa)
MQTHNHHNGQQTQPDNTTTNNRQLKNHHGDGGQGAEWTPSGYCSRQGCVHLQAAYQQRSTSAGLVGSPPCPES*

Sequence

>CNT3094992
ACTCAAACTGCGATCAGAAAAGAAACCAGAAATTGGATGTTCATAAAGACGCCATTATTATTCACAAATGAGAAACAGAAAGGAACAGAAAGCGAAAACA
CATTGATGATCCTTTAAGACCATAATGCAAACACATAACCACCACAATGGGCAACAGACACAGCCAGACAACACGACAACCAACAACAGGCAACTTAAAA
ACCACCACGGAGACGGAGGACAAGGTGCAGAGTGGACTCCTTCTGGATATTGTAGTCGGCAAGGGTGCGTCCATCTTCAAGCTGCTTACCAGCAAAGATC
AACCTCTGCTGGTCTGGTGGGATCCCCTCCTTGTCCTGAATCTTAGCTTTCACATTGTCGATGGTGTCAGAACTCTCCACCTCCAAGGTGATGGTCTTCC
CGGTTAAGGTCTTCACAAAGATCTGCATTCCTCCCCTCAGCCTCAGCACCAAGTGAAGGGTGGACTCCTTCTGAATGTTGTAGTCCGCAAGGGTGCGGCC
ATCCTCAAGCTGTTTACCAGCGAAGATCAACCTCTGCTGGTCTGGGGGAATACCCTCCTTGTCTTGGATCTTGGCCTTAACATTGTCAATGGTGTCGGAG
CTCTCAACCTCCAGGGTGATGGTCTTCCCGGTAAGGGTCTTAACAAAAATCTGCATACCACCACGGAGACGGAGGACAAGATGGAGGGTAGACTCCTTCT
GGATGTTGTAGTCAGCTAGGGTGCGGCCGTCCTCCAATTGCTTACCAGCGAAGATCAACCTCTGCTGGTCTGGGGGAATTCCCTCCTTATCCTGGATCTT
AGCCTTCACGTTGTCAATGGTGTCGGAGCTTTCCACCTCCAAAGTGATGGTCTTTCCGGTAAGAGTCTTAACGAAGATCTGCATACCACCACGGAGACGG
AGGACCAAATGTAGGGTAGACTCCTTCTGGATGTTGTAGTCAGCTAGGGTGCGGCCATCTTCCAACTGTTTCCCTGCAAAGATCAACCTCTGCTGGTCTG
GGGGAATGCCTTCCTTATCCTGGATCTTAGCCTTAACATTGTCAATGGTGTCTGAGCTTTCGACCTCAAGGGTAATCGTCTTACCCGTAAGAGTCTTAAC
GAAGATCTGCATACCACCACAGAAATTTGAAGGCAATTAATAGAAATTATAATAGAAATCAGAT