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Detailed information on CNT3094874


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONMTRT001412, E-value = 2e-31

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30378101Solanum tuberosumArabidopsis thaliana32.6430.2784.64267forward
CNT30526134Solanum tuberosumPhaseolus vulgaris38.0248.8287.78311forward
CNT3043899Solanum tuberosumPrunus dulcis20.0533.481.1164forward
CNT30636154Solanum tuberosumCapsicum annuum28.4850.4393.13233forward
CNT30314068Solanum tuberosumCamelina sativa39.1221.1183.12320forward
CNT3082269Solanum tuberosumBrassica juncea36.6746.384300forward
CNT30652736Solanum tuberosumRosa chinensis20.929.5387.72171forward
CNT30625209Solanum tuberosumDaucus carota37.4145.3383.01306forward
CNT30362691Solanum tuberosumSorghum bicolor39.1232.3684.06320forward
CNT3055928Solanum tuberosumAmborella trichopoda23.5921.9882.9193forward

Expression of CNT3094874

Peptides detected in this lncRNA

>peptide 1 (57 aa)
MNLINLLHLAALSVSFRILKCRHVGISISAFLINAQTEFQHPVNSVAKGVWLLKAET*

>peptide 2 (35 aa)
MQACRHQHLRFPHQCSNRVSASCEFCCQRCLAPQG*

>peptide 3 (76 aa)
MLRGRSSESTIPFTKLKYSGINSSQLSMINTRRTYSLILLGFFFVSKRSKGALFGTKRTALNSNWPSTEKCFTARCS

Sequence

>CNT3094874
TGGGATAAAGCAAAAACTAGAGAATAAGTAGGAAGGGAACCCATAAACTATCAAAACATTAATAATGAACTTAATCAACCTCCTCCATCTTGCTGCCCTC
AGCGTCAGCTTCAGGATCCTCAAATGCAGGCATGTCGGCATCAGCATCTCCGCTTTCCTCATCAATGCTCAAACCGAGTTTCAGCATCCTGTGAATTCTG
TTGCCAAAGGTGTTTGGCTCCTCAAGGCTGAAACCTGAGGTTAGAAGGGCAGTCTCAAAAAGCAAGAGAACCAAGTCCTTCACAGACTTGTCATTCTTGC
CTTCCTTGGTAGCAGAAACAAGCTTTTTGCCCTCAAATTCCTTCAGCTGACCAATGGAGTACTCATCAATGGCATCAACCATGTAAAGTACCTCATATCC
CTTCTTCTTCAGTTTCTCCAGGAAGGGAGAGTTCTCAACAGCCTTCTTGCTCTCACCAGTAATGTAGTAAATATCATTCTGGCCCTCCTTCATTCTGCAA
TTTCAAAGAAAAGCTCAACACACTTCTTCACCAAATTCTTGCGAATAACCTTTAGGATCTTGTTCTGCTGCAATGTCTCTCTGGAGATGTTGAGAGGAAG
GTCCTCAGAATCCACAATACCCTTCACAAAGCTCAAATATTCAGGAATCAACTCCTCACAGTTATCCATGATAAACACACGGCGAACATACAGCTTGATA
TTGTTGGGCTTCTTCTTTGTGTCAAAGAGGTCAAAAGGAGCCCTTTTTGGAACAAAAAGGACAGCCTTGAACTCCAACTGGCCCTCAACAGAGAAGTGCT
TCACAGCAAGATGCTCTT