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Detailed information on CNT3094818


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONSTUT002584, E-value = 1e-96

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30503976Solanum tuberosumNicotiana attenuata65.849.1984.87304forward
CNT30635817Solanum tuberosumCapsicum annuum39.8333.3991.85184forward
CNT30260341Solanum tuberosumBrassica rapa17.7520.691.4682forward
CNT30612531Solanum tuberosumArabis alpina17.3220.191.2580forward

Expression of CNT3094818

Peptides detected in this lncRNA

>peptide 1 (34 aa)
MPRVVSWLKLQPFTFAVHLCGSSEEWRTTDASSL*

Sequence

>CNT3094818
TTTGGAGAAAGAAAAAAAGGAAAAGAGAAAAACGAAGGGCAAAAATGAAGGTGAAATTACTAGAATGTCCTGGTAGGAGCTAGGGTTAGTTACCACCCTA
TAAATACAAGAGGAGGCCGCATTTGCACCGTGGAGGCGGCGGAAGACGAGATAAAGAGAGTGCCGACGGTGATTTTCGAGCAAGCATGAGGGCCAAGTGG
AAGAAGAAGCGTATGAGGAGACTGAAGAGGAAGCGCAGAAAGATGAGACAGAGATCTAAGTAGAGCAGCCAGGGTCCAGATGCCTAGGGTGGTTTCTTGG
TTGAAACTGCAGCCTTTTACTTTCGCTGTCCATCTCTGTGGCAGCTCCGAAGAATGGAGGACTACTGATGCAAGCTCCTTGTGATCTTCATGGATGATGC
CTTCGACTAGAATGGTATATGTTATCTCATTGGGCATATAACCTTTGCTGATCATGTCCTCA