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Detailed information on CNT309471


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30184327Zea maysSecale cereale10.3566.6784.51142forward
CNT30398990Zea maysTriticum turgidum9.1129.2186.4125forward
CNT30459409Zea maysSaccharum spontaneum10.7941.8198.65148forward

Expression of CNT309471

Peptides detected in this lncRNA

>peptide 1 (32 aa)
KASPGAFPISTCWRLGSRLADTILLDTSTRPL*

>peptide 2 (46 aa)
MKWTSDGDPSVHDDRDRVLNLSSLHLSCVPNFQLQCRLRWLISDHL*

>peptide 3 (32 aa)
MTTQPLAHWLGRGRKLREDAKPLVYCIWWHQA*

>peptide 4 (66 aa)
MLRKRVLPMFQIIVHLDLMIQSIISGVVYSQCIVSICVCVLCFPCTLFLSRGTLCQVPEIWFSFRQ*

>peptide 5 (80 aa)
MVAPSMRQELHYLQESHKIHCKIILVAFLQVVQLLPQACCLPLPELSVPRKENRDLERKFINKPESEGCLGSGYSLCSRL*

>peptide 6 (51 aa)
MKLPCLTRPTGCLLHTVATHQHCWPALRHIFALRPLDTCFLSQQHAETLHL*

>peptide 7 (57 aa)
MRSHWCIAYGGTKHEAGTALLARKSQNPLQDHTCGFLASCAVVASSLLPPFARAIGP*

Sequence

>CNT309471
AAAAGGCCAGTCCGGGGGCTTTTCCTATCTCCACTTGTTGGCGACTTGGTAGTAGACTCGCGGATACGATCCTTCTAGACACTTCGACGCGCCCGTTATA
AAGGCCGGCGCATCCGGGCCATGACCACACAGCCCCTTGCTCATTGGCTAGGGCGGGGAAGGAAATTGCGGGAGGATGCGAAGCCATTGGTGTATTGCAT
ATGGTGGCACCAAGCATGAGGCAGGAACTGCATTACTTGCAAGAAAGTCACAAAATCCATTGCAAGATCATACTTGTGGCTTTCTTGCAAGTTGTGCAGT
TGTTGCCTCAAGCTTGCTGCCTCCCTTTGCCAGAGCTATCGGTCCCTAGAAAGGAAAATCGTGATTTGGAAAGGAAATTCATCAACAAACCTGAGTCGGA
AGGATGCTTAGGAAGCGGGTACTCCCTATGTTCCAGATTATAGTTCATTTAGATTTGATGATTCAATCAATTATTTCTGGGGTGGTCTACAGCCAATGCA
TAGTCTCTATCTGTGTGTGTGTTTTGTGTTTCCCGTGCACTCTATTCCTTTCGAGAGGCACTCTATGTCAGGTGCCTGAAATATGGTTTAGCTTCAGGCA
ATGAAGTGGACGTCGGATGGAGATCCGAGTGTCCACGATGACAGAGACCGGGTTTTGAATCTCTCGTCTCTCCATCTCTCATGCGTTCCCAACTTCCAAC
TCCAATGCCGTCTCCGCTGGCTGATCAGTGATCACCTCTGACCCTCTCTGGTGATGTGTACCCATTGTTAATCTCTCCAATGAAGCTACCCTGCCTGACC
AGGCCCACAGGCTGTCTCCTGCATACGGTGGCAACACACCAACACTGCTGGCCTGCCCTAAGACACATCTTCGCGTTGCGTCCACTGGATACCTGCTTTC
TTAGTCAGCAGCATGCCGAAACCCTCCATTTGTGAAACCTCAGCGGTGATAGGCGGTGGTTGTCGAACGCTGGCATGAAGGTGTGAGCTCCCAACTGCTG
AATCGTGTTCCTCTTTTACATGCACGTGTCCAACAAGAACCAAGAACCGAGATTAGCGCTACCTCAGTACACTGCCGGTGCAAGATAAACGAAGGAAGCT
GGGATTGCATGGCACTGCGGTCTGTTATGTAGCCGTGGAACAGCAAGACAAAAAGACATGGATATTCCTTGTTTGGATTGGGGTGTTTGATCCAGAAACA
GTCTCATTGCTAATTGTTTCATTATTACTACAAATCTTGGTCGAGGCGTGAATATCCTTGCTCTTGATATAATTATAGTATTTTGAATCCCTATTGTGTT
TTTTACTTAAGTGATAAATGTTGCAAAGAAACCATTAGATAATTGTTGAATGATTAGTTATTGATTACATTG