« Back to Solanum tuberosum search


Detailed information on CNT3094505


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30217087Solanum tuberosumKalanchoe fedtschenkoi22.4214.8283.12154forward

Expression of CNT3094505

Peptides detected in this lncRNA

>peptide 1 (37 aa)
AYSVFLNGPAFTNGPTSKNPWARPTSTPRRSGFTAVR*

>peptide 2 (61 aa)
LHTLCFLMGQPLRMGQLVRIHGPGPLLLPGEVGSPRSGRQASWRGTMQSMDLRLLEFQDFQ*

>peptide 3 (31 aa)
MGQAHFYSPEKWVHRGPVGRQVGEVPCNQWT*

Sequence

>CNT3094505
CTGCATACTCTGTGTTTCTTAATGGGCCAGCCTTTACGAATGGGCCAACTAGTAAGAATCCATGGGCCAGGCCCACTTCTACTCCCCGGAGAAGTGGGTT
CACCGCGGTCCGGTAGGCAGGCAAGTTGGAGAGGTACCATGCAATCAATGGACTTGAGGTTACTGGAGTTTCAAGACTTCCAATGAAAGGGTCACCATTT
AGAGGTTGAATCACTTGGAAAGTAGGCTGCAGAACCAAAGAAGATCAGGACATGAATTAGTTAAAATTATTGGGAGTCAATTAAGCAAAGTCTGGCACAT
ATACATGATTCGAAGAGGGTTCAATTGAATTCTATTGTTGAAAAATTGTATCATGCATGGTGGCAGGGGCGTAGCTACTTGACACCCTTCGTCGGGAAAT
AATACCGTATATATAAGTAAAATGATATACGAAGTGATTAAATAACATATTTTAGACACCCTTGACAAAAAAAAGTGTTGTAGCCTAGTGATTTTAGATG
TCTTGAAAGAGCCGTAAGTGCTCATGTGTTTGAATCTCACTAGCAACATTTTTCCCACCAAAAATTATAATTAGGAAACTTATAAGATGCAAAAGGGGTG
GAGCTACGTGGTTTAAAAGGGTTTCAATTGAATCTACTTTATAGAAAAATTATATTGTGCATATAGCCGGAATACTTGATATTTAAC