Detailed information on CNT3094368


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30639966Solanum tuberosumNymphaea colorata20.463.5390.5753forward
CNT30533956Solanum tuberosumEucalyptus grandis89.5833.2482.33232forward
CNT30516757Solanum tuberosumJuglans regia79.1541.4180.98205forward
CNT30376279Solanum tuberosumArabidopsis thaliana40.1517.4585.58104forward
CNT3021623Solanum tuberosumCitrullus lanatus73.3613.9981.05190forward
CNT30730016Solanum tuberosumCorchorus capsularis74.929.3184.02194forward
CNT30629841Solanum tuberosumVigna unguiculata72.5932.1480.85188forward
CNT30507458Solanum tuberosumNicotiana attenuata92.2815.8790.79239forward
CNT30712439Solanum tuberosumGlycine max6126.4281.01158forward
CNT3042792Solanum tuberosumPrunus dulcis40.1528.1884.62104forward
CNT3084712Solanum tuberosumVigna radiata35.5232.5184.7892forward
CNT30172489Solanum tuberosumTrifolium pratense41.318.387.85107forward
CNT30261201Solanum tuberosumBrassica rapa35.5210.3682.6192forward
CNT30217112Solanum tuberosumKalanchoe fedtschenkoi43.2411.6886.61112forward
CNT30129085Solanum tuberosumCorymbia citriodora88.4221.7582.97229forward
CNT30154501Solanum tuberosumPrunus persica55.9846.4783.45145forward
CNT30570425Solanum tuberosumVitis vinifera54.058.0683.57140forward
CNT3031830Solanum tuberosumTheobroma cacao55.639.4584.03144forward
CNT3037832Solanum tuberosumCucumis melo85.7126.3780.63222forward
CNT30582414Solanum tuberosumEchinochloa crusgalli21.629.4687.556forward
CNT30112090Solanum tuberosumFicus carica67.958.685.8176forward
CNT30726868Solanum tuberosumLupinus angustifolius28.968.798875forward
CNT3049017Solanum tuberosumCucumis sativus85.7122.6381.98222forward

Expression of CNT3094368

Peptides detected in this lncRNA

>peptide 1 (31 aa)
MGQAHFYSPEKWVHRGPVGRQVGEVPCNQWA*

>peptide 2 (61 aa)
LHTLCFLMGQPLRMGQLVRIHGPGPLLLPGEVGSPRSGRQASWRGTMQSMGLRLLEFQDFQ*

>peptide 3 (38 aa)
PAYSVFLNGPAFTNGPTSKNPWARPTSTPRRSGFTAVR*

Sequence

>CNT3094368
CCTGCATACTCTGTGTTTCTTAATGGGCCAGCCTTTACGAATGGGCCAACTAGTAAGAATCCATGGGCCAGGCCCACTTCTACTCCCCGGAGAAGTGGGT
TCACCGCGGTCCGGTAGGCAGGCAAGTTGGAGAGGTACCATGCAATCAATGGGCTTGAGGTTACTGGAGTTTCAAGACTTCCAATGAAAGGGTCACCATT
TAGAGGTTGAATCACTTGGAAAGTAGGCTGCAGAACCAAAGAAGATCAGGACATGAATT