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Detailed information on CNT3094286


BLAST search results

BLAST vs Swiss-Prot:
sp|O04857|PP12_TOBAC, E-value = 2e-94

BLAST vs NONCODE:
NONPOPT001921, E-value = 2e-45

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30553142Solanum tuberosumOryza glaberrima24.6839.4585.96114forward
CNT30206348Solanum tuberosumHelianthus annuus72.5144.8584.18335forward
CNT30338251Solanum tuberosumEragrostis tef59.7452.0883.7276forward
CNT30595937Solanum tuberosumOryza meridionalis58.8764.9284.93272forward
CNT30100650Solanum tuberosumOryza rufipogon58.8738.1584.93272forward

Expression of CNT3094286

Peptides detected in this lncRNA

>peptide 1 (63 aa)
LMGTTNKVHILLHQELCHFIRTKVNHKANRNREHLLDEANFVSDPCLLDQEKGHHACKVFYHL*

>peptide 2 (52 aa)
MHAKYFIIYESCHGKTVETISENFPQPHIESALTFIIKSVYPVNRSTLMIPS*

>peptide 3 (91 aa)
PDGHDKQGPYLVASRTLPLYQDQSKSQSKPESGTSVGRGKFRIRSMSVRSGERPPCMQSILSSMRAATGRQLKQSVKTFHSLTLNRRLHSS*

Sequence

>CNT3094286
ACCTGATGGGCACGACAAACAAGGTCCATATCTTGTTGCATCAAGAACTCTGCCACTTTATCAGGACCAAAGTAAATCACAAAGCAAACCGGAATCGGGA
ACATCTGTTGGACGAGGCAAATTTCGTATCAGATCCATGTCTGTTAGATCAGGAGAAAGGCCACCATGCATGCAAAGTATTTTATCATCTATGAGAGCTG
CCACGGGAAGACAGTTGAAACAATCAGTGAAAACTTTCCACAGCCTCACATTGAATCGGCGCTTACATTCATCATAAAATCCGTATATCCGGTTAATAGA
AGCACACTCATGATTCCCTCTTAACAGAAAGAAGTTCTCTGGGTATTTAATTTTGTAAGCAAGAAGAAGGCATATAGTCTCCAAACTCTGTTTGCCACGA
TCAACATAGTCCCCTAAAAACAAGTAATTAGACTGGGGTGGGAATCCACCATATTCAAAAAG