Detailed information on CNT3094274


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30670689Solanum tuberosumSetaria viridis10027.5498.64295forward
CNT30702366Solanum tuberosumQuercus lobata71.8621.2999.53212forward
CNT3020470Solanum tuberosumCitrullus lanatus30.8516.8898.991forward
CNT30505560Solanum tuberosumNicotiana attenuata71.869.5999.53212forward
CNT30300699Solanum tuberosumTriticum aestivum71.8639.3398.58212forward
CNT30221833Solanum tuberosumHordeum vulgare71.8615.5397.17212reverse complement
CNT30384972Solanum tuberosumTriticum turgidum71.8634.2598.58212forward
CNT30508923Solanum tuberosumSolanum lycopersicum64.7557.19100191reverse complement
CNT30554477Solanum tuberosumOryza glaberrima10040.897.63295forward
CNT30147396Solanum tuberosumMedicago truncatula71.867.1399.53212reverse complement
CNT30441199Solanum tuberosumAegilops tauschii71.8621.3598.58212reverse complement
CNT30245388Solanum tuberosumAvena sativa30.8526.398.991forward
CNT3067980Solanum tuberosumLeersia perrieri45.7644.8594.81135forward
CNT30208772Solanum tuberosumHelianthus annuus71.8639.19100212reverse complement
CNT30718256Solanum tuberosumMalus domestica golden48.8147.0690.28144reverse complement
CNT30682011Solanum tuberosumTriticum urartu71.8621.7498.58212reverse complement
CNT30357719Solanum tuberosumLactuca sativa78.6412.4499.57232forward
CNT30429739Solanum tuberosumPapaver somniferum71.866.5997.17212reverse complement
CNT30644906Solanum tuberosumCannabis sativa30.1727.8195.5189forward
CNT3057237Solanum tuberosumAmborella trichopoda71.8615.3691.98212reverse complement
CNT30320583Solanum tuberosumAsparagus officinalis59.6616.0498.3176reverse complement
CNT30118993Solanum tuberosumCitrus clementina66.155.494.36195reverse complement
CNT3099471Solanum tuberosumOryza rufipogon85.4210098.81252forward

Expression of CNT3094274

Peptides detected in this lncRNA

>peptide 1 (66 aa)
WESSACYPRRTFDPLSESPSTRDSRITMADFRLCSTSRSHSQAGLYHYAHEQNLSLSLPSHTSVTL*

Sequence

>CNT3094274
CTTGGGAGTCATCAGCCTGTTATCCCCGGCGTACCTTTGATCCGTTGAGCGAGAGCCCTTCCACACGGGACTCCCGGATCACTATGGCCGACTTTCGTCT
CTGTTCGACCAGTCGGTCTCACAGTCAGGCAGGCTTATACCATTACGCTCACGAGCAGAATCTTAGCTTGAGCCTACCTTCGCACACCTCCGTTACTCTT
TAGGAGGCATCCTTAGACGAAAGAGTGGTCTTTCAGGATTGGTCGTTGTGTGTCACCACCTCCCACCTATCCTACACATTCGATTAAGGTTGTCA