« Back to Solanum tuberosum search


Detailed information on CNT3094227


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30373331Solanum tuberosumArabidopsis thaliana18.5927.6287.9358forward
CNT3033027Solanum tuberosumTheobroma cacao17.6324.8987.2755forward
CNT30725595Solanum tuberosumLupinus angustifolius21.4710.6586.5767forward

Expression of CNT3094227

Peptides detected in this lncRNA

>peptide 1 (29 aa)
MLNNKRGSISLIGTPVSKFNCAKIPFPVIA

Sequence

>CNT3094227
TTACCATTTCATCACACTCCTTATCGGGTGTACTTTTAAAATTAATTAAAGAGAGTGCAAACAACTTTGAAGGAATTTAAAGGAGGTTTGAATTCTTATT
AAAAGAAACTACACATAAGTCATACACACAAAAAGTACTAGTACTCTATATCTAATCTTCTTCCTCATCAGTGATAAATTTGCCAGTACCAGGATTAATA
GCAGCAAAGAAGAAGAAGGCAATGTTAAACAACAAAAGAGGCTCAATCTCATTGATTGGGACACCTGTCTCAAAATTCAATTGTGCCAAAATACCCTTTC
CTGTTATTGCTT