« Back to Solanum tuberosum search


Detailed information on CNT3094085


BLAST search results

BLAST vs Swiss-Prot:
sp|O65821|H2B1_SOLLC, E-value = 1e-55

BLAST vs NONCODE:
NONSLYT002071, E-value = 8e-175

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30675321Solanum tuberosumSetaria viridis13.6624.4792.7569forward
CNT30315505Solanum tuberosumCorylus avellana31.2934.5785.44158forward
CNT30518188Solanum tuberosumJuglans regia58.8133.7180.47297forward
CNT30702570Solanum tuberosumQuercus lobata31.2931.682.28158forward
CNT30618877Solanum tuberosumSesamum indicum25.3516.2684.38128forward
CNT3072234Solanum tuberosumQuercus suber35.4528.4179.89179forward
CNT30379403Solanum tuberosumManihot esculenta59.4153.3879.67300forward
CNT30526608Solanum tuberosumPhaseolus vulgaris51.4932.1481.92260forward
CNT30632073Solanum tuberosumVigna unguiculata43.9629.5281.53222forward
CNT30194853Solanum tuberosumPisum sativum70.6947.680.39357forward
CNT30163367Solanum tuberosumPistacia vera69.542.1480.63351forward
CNT30565715Solanum tuberosumActinidia chinensis58.6137.7180.41296forward
CNT3086649Solanum tuberosumVigna radiata29.519.9785.91149forward
CNT30510004Solanum tuberosumSolanum lycopersicum53.4788.5292.22270forward
CNT30172842Solanum tuberosumTrifolium pratense58.0252.8981.91293forward
CNT30597299Solanum tuberosumFraxinus excelsior59.4154.6483.33300forward
CNT30606042Solanum tuberosumGossypium raimondii33.2755.0886.9168forward
CNT30205622Solanum tuberosumHelianthus annuus24.1645.1986.07122forward
CNT30129800Solanum tuberosumCorymbia citriodora36.6322.9883.24185forward
CNT30619778Solanum tuberosumCajanus cajan41.3931.5784.69209forward
CNT30360275Solanum tuberosumLactuca sativa27.1330.6586.13137forward
CNT30429187Solanum tuberosumPapaver somniferum57.4327.8382.41290forward
CNT30570929Solanum tuberosumVitis vinifera42.1831.7483.1213forward
CNT3052765Solanum tuberosumAmborella trichopoda30.6930.5184.52155forward
CNT3024557Solanum tuberosumPopulus trichocarpa58.0256.5679.86293forward
CNT30174435Solanum tuberosumVigna angularis58.6144.1882.43296forward
CNT30724478Solanum tuberosumLupinus angustifolius53.8645.1182.72272forward
CNT30114697Solanum tuberosumEutrema salsugineum73.0760.279.13369forward

Expression of CNT3094085

Peptides detected in this lncRNA

>peptide 1 (79 aa)
MLSQFTRQNKSYSSLNFPRCNCRLLINPSQSRCFLSKLFKYIINETVHYSHRLAGNTDIRMHLLEHLEDVDLVGFNALL*

Sequence

>CNT3094085
CATTGACCCAAAATACAAATTCAAACCCTAGTTGCTAGTGAACTTAGTAACAGCCTTAGTTCCCTCAGAAACAGCATGCTTAGCCAATTCACCAGGCAAA
ACAAGTCTTACAGCAGTCTGAATTTCCCTAGATGTAATTGTAGGCTTCTTATTAATCCTAGCCAATCTAGATGCTTCCTGAGCAAGCTTTTCAAATATAT
CATTAATGAAACTGTTCATTATTCCCATAGACTTGCTGGAAATACCGATATCAGGATGCACCTGCTTGAGCACCTTGAAGATGTAGATCTTGTAGGTTTC
AACGCTCTTCTTTGACCTCTTCTTCTTCTTGTCGGCGCCGGCATCCTTTGGGAGCTTCTTTCCGGCCTTAGGCTTCTTCTCAGCAGGAACTTCCTCAGCC
TTCTTCTCATCAACTGGTTTCTTCTCCGCTGGCTTCTTTCCTGCCTTTGGTGCCATTGTTCAGAATTGAAGGCTGAATTGAAATTTCTTTTGCTATGGTT
ATGAG