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Detailed information on CNT3094036


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9ATM6|PIP24_MAIZE, E-value = 1e-30

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT3070602Solanum tuberosumQuercus suber8.1624.7689.7478forward
CNT30632234Solanum tuberosumVigna unguiculata8.4723.6886.4281forward
CNT30711842Solanum tuberosumGlycine max8.8936.1789.4185forward
CNT30218729Solanum tuberosumKalanchoe fedtschenkoi6.1720.3488.1459forward
CNT30572629Solanum tuberosumVitis vinifera7.7427.8286.4974forward
CNT30318651Solanum tuberosumAsparagus officinalis7.1120.0691.1868forward
CNT30176173Solanum tuberosumVigna angularis928.288.3786forward

Expression of CNT3094036

Peptides detected in this lncRNA

>peptide 1 (30 aa)
MCPRGHHKYYIIINNNVSTRGYIYTFKIHY*

>peptide 2 (40 aa)
MKIMPPKAQAIPRIPTPPHTSPPASTSAWCWYPITVKIVI*

>peptide 3 (29 aa)
MIPNFENDLLPLHYLIVYFKDIYVSTGTS*

Sequence

>CNT3094036
ATTTAATTTGGGAAAGAGTAATTACTCCTTTTCTCCCTTTTTAATTTCTCCACTTAAATAAATACTAGGAAAAAATGTCTAAATATATCTAAACTTTGAC
CCAAATTGCTATAATGATACCGAACTTTGAAAATGATCTTTTACCCCTGCACTATTTAATAGTATATTTTAAAGATATATATGTGTCCACGGGGACATCA
TAAATATTACATCATTATAAATAATAATGTGTCCACACGTGGATACATATATACATTTAAAATACATTATTAAATAGTGCAGAGTAAAATGTCTACCATA
AAATTTTGTATCGTAACAGTAATTTCAATCAAAGTTGAGTATTTTTCAGACCATTTTCCTTAAATACTAAGATATGAGTTGTTGTCACTTGTGATTTTAT
TTTTTTTATTTCCAAATCATTTTCCCTATTTTTAAAAATTTGCTCTCTAGAAAAAAACATTTTAACCAATCAAATACGAGAAATCAAAAAACATTTTTCT
GAATTTCAATAGGAGGGATAAAGAATAACTAATTTCGAGATTATTTTTAGGATAAGTTTATTCTATGATTAGTTGGGATAAAATCACAAAATTAGTTATC
TCTAGATGTTGTGTTATTTTTATCCAGCACTAAAAATGAGATAATAATCTTGAAATAACTAATTCTGAATTAATCTCGAAATAACTAATATTGAGAAAAC
TTACCAGAGATACCGGCGGTGCAGTAGACAAGAATGAAAATCATGCCACCAAAAGCCCAAGCAATACCAAGAATACCAACTCCACCACATACATCACCTC
CAGCATCTACATCAGCTTGGTGTTGGTACCCAATTACTGTCAAAATAGTAATATAAAGGAACAACAAAGTGGCTATAAATTCAGCAATAATTGCCCTGTA
AAATGACCATTGTGTTAGGTCAGTATAGTCTTTTGCTGAAAACTCTCCTCTTTCTG