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Detailed information on CNT3093704


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9LIN5|IF4B1_ARATH, E-value = 2e-24

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30509707Solanum tuberosumSolanum lycopersicum98.8663.4498.27347forward

Expression of CNT3093704

Peptides detected in this lncRNA

>peptide 1 (54 aa)
SRLPKYPPLPPWKDLLSSPGLAHASPPPRDRGLSIWSLGLAHASPPPRDLGLSI*

>peptide 2 (49 aa)
PGCQNILLYLLGKIFSHHLALPMHLHHPVIEASPFGHLVLPMHLLHRVI*

>peptide 3 (29 aa)
LPAAKISSSTSLERSSLITWPCPCISTTP*

Sequence

>CNT3093704
CTCCCGGCTGCCAAAATATCCTCCTCTACCTCCTTGGAAAGATCTTCTCTCATCACCTGGCCTTGCCCATGCATCTCCACCACCCCGTGATCGAGGCCTC
TCCATTTGGTCACTTGGTCTTGCCCATGCATCTCCTCCACCGCGTGATCTAGGCCTGTCCATCTGATCACCAGCTCTACGGTCCTCATAAGATGCTTGAT
GAGAAAGGCTCCTATCAGGATGTCCAGCACCCCTGCCTGATCCAGAGCCTGGCCTTTGAATGGGTTTCTGACTGAAACGGACTTTGTCATCCAAATCACG
GATCAGCAGTTCCAAGTCCTTCTCTTTCTGATTAATCACATTCTGTAAATT