Detailed information on CNT3093646


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONATHT001124, E-value = 1e-50

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30269710Solanum tuberosumChenopodium quinoa9.7247.8693.53201forward
CNT30162048Solanum tuberosumPistacia vera967.3991.94186reverse complement
CNT30683484Solanum tuberosumTriticum urartu7.0130.7993.79145forward
CNT30104358Solanum tuberosumOryza rufipogon2.922.0693.3360reverse complement

Expression of CNT3093646

Peptides detected in this lncRNA

>peptide 1 (31 aa)
MPSSKKEGESQEIFIQLGLIQLMNHSRMNFV*

>peptide 2 (31 aa)
MIEARTLSGQVLLIDRNDIVEMLYGPIYIGA*

>peptide 3 (51 aa)
PIRVVKKYRFSWLLTNGKHRIKKGRISFLKKISFFFFLNDKGTYGRGIFGG*

>peptide 4 (49 aa)
MDYFDFRDFLHHLLKKGDNGKLSLIIQSDSFLIGCQPFLNSCTYIQIYR*

>peptide 5 (50 aa)
MQLRGPFGRPDRWWYHTPLKGTIRDTLASYGSIPEAGPSVFFDKRVRKPF*

>peptide 6 (36 aa)
MRSPTCTLPCKHEIVSSPTTTRASVVLSLTPREAIL*

>peptide 7 (42 aa)
MAKRYWEELSQSKLTNRRNEKKVRSYKGLTPSLHKKFLERKT*

>peptide 8 (35 aa)
MRPQVSLFLFSRSRLNLVRKRNWLAVDIFFTSPAT*

>peptide 9 (36 aa)
MLRFRFPFYRPSLGSLSMRVCLHRRKRGNHKKFSYN*

Sequence

>CNT3093646
CCTATACGAGTAGTGAAGAAGTATAGATTTAGTTGGTTGTTGACCAACGGAAAGCATAGGATCAAAAAAGGAAGAATTTCTTTTCTAAAAAAAATCTCTT
TCTTTTTTTTCCTCAACGACAAAGGAACTTACGGGCGGGGCATTTTCGGGGGCTAGCCCGCTTCCCATTACTCAATCGGGAAATTCCTCACACATAATTA
AGGGAGCCATTGAAAGGTGACTAAAACACCAGAAAGGGGACTACCCAAGCTAATGATAGAGGCAAGAACACTTTCCGGCCAAGTCCTATTAATTGATCGT
AATGATATCGTGGAAATGCTGTACGGACCCATATATATAGGAGCATAAAAACTAGCACCTTGATCTTCTTGTAAATGGGAAGATCTACGATAGGCGGCCA
ACCTCCTTGACAGAGCGATGTGCATAGACCAGGTGAGTAGGGATGCAGCTCCGTGGACCGTTTGGCAGGCCTGATAGGTGGTGGTATCATACCCCTCTCA
AAGGAACCATACGTGATACTCTCGCGTCATACGGCTCCATCCCGGAAGCAGGACCTTCCGTTTTCTTTGACAAACGGGTCCGCAAACCTTTCTGATTTCG
TGCCGAACTAAGTCTCCATCTTCGAACTTCCCGTTCGATGAGACCCCAGGTCTCGCTATTTCTGTTTTCTAGGTCACGCCTTAACCTAGTTAGAAAGCGG
AATTGGCTAGCTGTCGACATATTTTTTACGTCACCGGCCACATAGTCCGCAGCATCTTTCACTGCATCGCATTTCCCGGGGCTGAATCCCCTTTCTTGAG
CGATCGCCTTCGCTCATTGGCAAAACTCCTTGATGAGTGCATCTAGTTTGTTGGGGTGACACTCCGCCTCTTTATACTCTTAGGAGGCGAGAAACTCCCG
TTCCCTTCTCCTTCCTTACTCTTCCGAGGATGGTTCAGGGGGAGCCGGTTCCGCCTCCGGCTGAGGAGGGAAATTTCAATCGATAGGCGGTAGCTTCGAC
GAGCTGGGACGTGGAAGTGAAAACCCTAAACTTGAAACCCTACCCTTCTTTGCTACTCACTATCTAAGGGGCAAATCCGAAGTCGGCTCTCAAGGCCCGG
AAGCTTGGGGATTGAATACCCCTATGTTCCAAGTGACTAGCTTGGCTGGTGATGCGTTCACCCACTTGCACGCTTCCTTGCAAGCACGAAATCGTTAGTT
CTCCCACTACTACACGGGCCAGTGTAGTCTTATCGCTAACCCCGAGAGAGGCTATACTCTAAGAGCCAACCGACTTATTATCCTTGGATGCAAGGATTAA
GAACTAGCGATTTATCAGGGGCTGAGCATACCTTCCACTAAGGAACAAGAAATGGAGCTATTATGTTAAGGTTCCGCTTTCCTTTTTATAGACCTTCTTT
GGGTTCCCTATCGATGCGTGTATGCCTTCATCGAAGAAAGAGGGGGAATCACAAGAAATTTTCATACAACTAGGCCTAATTCAATTAATGAATCATTCGA
GAATGAATTTTGTGTGACTAATCTAATCTTATTCAACCTTAGATGGGAATTAGGGCAAAACCTAGGGTGGTCTCTGCCTTCTTAACACGCGGCACACCAA
CTTGAAGTCTAATTTGAAAATCTCTCTCTACCTTCACAAAAATTCTCGCGCCCTTCTCGTAGTTTTGACTTCTCGCGAGACCATTTCGGTCTACACACAC
ATGGCTAAGCGCTATTGGGAGGAGCTTTCTCAATCCAAGCTAACTAATAGAAGAAACGAAAAGAAAGTAAGATCTTATAAGGGACTCACCCCATCTTTAC
ATAAAAAATTTCTTGAACGGAAAACATAGATGCTTTCATGGACTACTTTGACTTTAGGGATTTCCTACATCATTTGCTAAAGAAGGGAGATAATGGGAAG
CTCAGTCTAATTATCCAAAGTGATTCTTTCTTGATTGGATGCCAGCCTTTTCTTAATTCATGCACTTACATACAAATCTATAGGTAGTTCATCTCCTTCT
AAGAAAAATATCCAAAGTTTTCATTTTTGATCTAATTTTGTCTAGTAAGCCTCGAGATCTTACAAAT