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Detailed information on CNT3093500


BLAST search results

BLAST vs Swiss-Prot:
sp|Q76CU2|PDR1_TOBAC, E-value = 4e-43

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30509722Solanum tuberosumSolanum lycopersicum41.2610092.12203forward

Expression of CNT3093500

Peptides detected in this lncRNA

>peptide 1 (71 aa)
MQQDHTRSMQQGKANSTISTILEYAVFSKTDTKITCHFSEKQWIKRKMEMKDFKKLTGRGTMNPEKRFHTA*

>peptide 2 (65 aa)
MNSLLSFLEVQCLNGICKQDGENNRPCNDNCCNDSKKIMLKSKITPQELFNIFIIGERSLDVSEL*

>peptide 3 (30 aa)
MAYANRTAKTTGHATIIAATTPRKSCSNPK*

Sequence

>CNT3093500
TCCTCTTCTTTCTCTCAAGTTGTTAGAAAATGAACTCTCTTTTATCTTTTCTGGAAGTTCAATGCCTTAATGGCATATGCAAACAGGACGGCGAAAACAA
CAGGCCATGCAACGATAATTGCTGCAACGACTCCAAGAAAATCATGCTCAAATCCAAAATAACGCCCCAAGAATTGTTCAACATTTTCATTATTGGTGAG
AGGAGTTTGGATGTCTCCGAATTGTGATGCAACAAGACCATACAAGGTCCATGCAACAGGGCAAAGCCAATAGTACCATCTCCACCATATTGGAATACGC
TGTTTTTAGCAAAACAGACACAAAGATAACATGTCATTTTTCCGAGAAACAGTGGATAAAAAGAAAGATGGAAATGAAGGATTTTAAAAAACTTACAGGT
CGTGGAACGATGAATCCTGAGAAGAGATTCCATACTGCATAGAAGAAGGCCGCGACAATGGATGCAACGTTTTGGTTGGGGGTAACAGCCAC