Detailed information on CNT3093400


BLAST search results

BLAST vs Swiss-Prot:
sp|P10978|POLX_TOBAC, E-value = 4e-17

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30510815Solanum tuberosumSolanum lycopersicum5.6934.1792.02163forward

Expression of CNT3093400

Peptides detected in this lncRNA

>peptide 1 (29 aa)
MGKVLETERQLEFSCSDKLTALPSKLLRC*

>peptide 2 (30 aa)
MQRDTSILSDLDLIRIRKINKDRRLKSSKF*

>peptide 3 (31 aa)
MAINFYVFGSFVKNWIAGNVNGDLAFYFFLF*

>peptide 4 (32 aa)
MFPLPFSIKMRSILFLCSFHEDSIVLHISFES*

>peptide 5 (39 aa)
MATWLFIFSYFDFYEVSFFATAEKNHCFRRCICRKPIWF*

>peptide 6 (40 aa)
MKTALFFTFPSNLSFGKLEVTGKAYYPIAFIHRMPKFFTV*

>peptide 7 (45 aa)
MLESKKENSEKNGKEEKLTEKEDLKFALIPCGNSETRIGKLFFAFH

>peptide 8 (54 aa)
MVPCDAKNSDDRLLPPNSSALSDLIILTLILNCLSIITRKYFRIVKALPFVFKR*

>peptide 9 (51 aa)
MKNHGQRRIGTEREAPRSVECEYMKFDEWFLVMQKIQMIDCFHPILVHYQI*

>peptide 10 (45 aa)
MKFRSLLQLKKIIVLDDAYVESLFGSSSYFTRFLFFSFYSGDSRT*

Sequence

>CNT3093400
GTTGTTGGGCTGAGACATTAACTTTTGGTTGAAAGTTTTGCATTTGGACCAGCTGAGATATAGACTCAATATTGTCTCTGAATTTCGTTTGATTGAGAAG
CTTCCCAGTAATCAGAACTTGAGCTTTCTTAGCTTCTTTCTCCTCTTCACTGACTTTCTTGATTTCAATTCCAACATCCCCCTCAAGTTGGAGGGGAGTG
AAGCGATCCCCAACTTGCCGAGAATTGAACGATGAGAGGGTCATGATCATAAAGGTTTGGTGAAGAGATCAACAAGCTGAGAGGAAGAGGGTACAAATTG
AAGAGATATCAATCCCGAGAGAAATTGTTGCCTAACAAAATGGCAATCAATTTCTACGTGTTTGGTTCTTTCGTGAAAAACTGGATTGCAGGCAATGTGA
ATGGCGACCTGGCTTTTTATTTTTTCCTATTTTGACTTCTATGAAGTTTCGTTCTTTGCTACAGCTGAAAAAAATCATTGTTTTAGACGATGCATATGTA
GAAAGCCTATTTGGTTCTAGTAGTTACTTTACTAGATTTTTATTTTTTTCTTTCTATAGTGGAGATAGTCGCACGTAATGAAAAATCACGGCCAAAGGAG
AATCGGAACTGAGCGAGAGGCTCCAAGGTCTGTGGAGTGTGAGTACATGAAGTTTGATGAATGGTTCCTTGTGATGCAAAAAATTCAGATGATAGATTGC
TTCCACCCAATTCTAGTGCATTATCAGATCTAATTATCTTAACCTTAATATTAAACTGTCTTTCAATCATCACAAGAAAATACTTTAGGATAGTGAAAGC
ATTGCCCTTTGTTTTCAAAAGATAAGTCCAGGTTGATCTACTATAGTCATCCACTATAGTTAAAAAAAAATTGTATCCATCATGTGAAGGGGTTTTGTAT
GGACACCAAGTGTCAATATGTATTAATTCAAAGATCTTCTTAGTACTAATCTCACTAGACTGGAAAGGTAATTTTGTTTGTCTAGCTAAATGACAGATAT
TGCAATCAGAATGAAAATGAAGAGAAGAAACAAGAGTTGAACAAACATTTTTCATTGATTGAAATGGCATATGCCCTAATCTAAGGTGCTATAGCCTTAC
ATCAAAACTACTTTTTTATAGGAATGGGAAAAGTACTAGAAACAGAAAGACAACTAGAATTCTCTTGTTCAGATAAATTAACTGCTCTGCCATCAAAACT
CTTAAGATGTTAAAAGCTTGACTCTGAGAGATATAGACTTTTCCTCACTTTACCAACTTCTAGAGGCCTCTTCATTTAAGGGCCCTGCAGAAAACAACCA
AAAGAAGAAAAAATGAGTAAACAACTTAATTGTTTGCACAACTTATAGACTGAAATGAGGTTATATTCGAAACAAGGAATAAACAATACATCCTTTAAGA
TGAGTTTAGGATGCAAAGAGATACTTCCATATTGAGTGACCTTGACCTTATAAGAATTAGGAAGATCAACAAAGATAGGAGACTCAAGAGTTCTAAGTTC
TAAGAAGATCCTTGAATCAAAACACATGTGTTGTGTAGCACCTGAATCTAGGATCCAGGTTTGGTGTTTGAACTGGACAAATTTATAAGGTGATTTGAAA
CCATTACTAGCACAGGTCACTGCATTAGCTGCTGCATTATATGGTGATTCTTCTGGTTGATTCATTTGCACATTATGAAGCATTTGAATTGAGTTGTGAG
CATTGATCTTTGGTGAAATGTTTCCCCTACCCTTCTCCATCAAAATGCGCTCCATTTTGTTCTTGTGTTCCTTCCATGAAGACAGCATTGTTCTTCACAT
TTCCTTCGAATCTTAGCTTTGGTAAACTTGAAGTCACTGGGAAAGCCTATTATCCTATAGCATTTATCCACAGAATGCCCAAGTTTTTTACAGTTTGAGC
ACACCAAATTAGTTTTCTTCCGTTTGGCTTCATAATATCCAGACTTCTGACCAAGAGTGGTCTGATTAGTGGCCAAGAAGGAAGTAGAGTTCCCTGGATA
GTGTGAGCTCATATACACCTCCCTCTATTTCTCATCTTGCATTAAGAGTAAGTAAGCATGATTCACAGAGGGTAATGGTGAGAGCATCATAATATTGCTT
TTCCCAGCTGCATAGACATCATTTAAACCCATTAAAAACTAAATCAATCTTTCATCTTGAAGAGACTTACCCATTTTTGCTTTTCCACCACACTGGCAGT
CAGATGTGCAGTTGACAGAAGTGCTTAGAGCATCAAGCTCATCCCACAACCTCTTGATTTTTGTGAAATACCCAGCAATATCATTTGATCCCTGCACTAA
ATTACTCAACTTTTTTTGTAGGTGATAGAGTTGAACACTATTACTTTGCCCAAACATGTCCTCAAGTTCCAGATCTTTGGTTGTTTTGGAGTTAATGACA
CTGTCAACTATCTCCTTTGAGAGAGAGAGTTGAGCAACCATGACAACACCATGTCATTGCACCTGCTCCATAGTTTGAAATCAGTTGAAGTAGAAGCTAG
TTCCTTTTGAGTACTATCAATGAACCCAATCTTATTTTTTGCTGAAAGGGCTATCAAGATTGACCTCTTCCATCTACATATCCCTTTCCATTGAAGGGTG
AGTTGACAAGATTCATTCCTGGGAAATCAGAAGCATAAAGAAAGAAAGGATGAGTGTGATCTGATAGAGGGTTTGAGGTATTTCCAGTTATTTTAGAGTT
ATCAGGAGTGACTACAGTTCCTATCACCAATGTTGGAGAGTAAAAAGGAGAATAGTGAGAAAAATGGAAAAGAAGAAAAGCTAACAGAGAAAGAGGATCT
CAAATTTGCTCTGATACCATGTGGAAATTCAGAGACTAGAATAGGAAAACTCTTTTTTGCCTTTCAT