Detailed information on CNT309319


BLAST search results

BLAST vs Swiss-Prot:
sp|P13192|PSAF_HORVU, E-value = 1e-78

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30678495Zea maysSetaria viridis37.3651.3997.06204forward
CNT30522442Zea maysSetaria italica57.8838.7796.52316forward
CNT30298665Zea maysTriticum aestivum40.1133.8592.69219forward
CNT30137478Zea maysLolium perenne30.0464.5783.54164reverse complement
CNT30684883Zea maysTriticum urartu40.1136.3892.69219forward
CNT30349302Zea maysEragrostis tef35.935.3294.9196forward
CNT30361255Zea maysSorghum bicolor10.0720.8394.5555forward
CNT30148341Zea maysBrachypodium distachyon3768.9492.57202forward
CNT30579037Zea maysEchinochloa crusgalli40.4823.3996.83221forward

Expression of CNT309319

Peptides detected in this lncRNA

>peptide 1 (31 aa)
MNPLGRRRVASSTSMMISLMAGFFSPLMAMR*

>peptide 2 (72 aa)
MVALMARAGALSGAYFLSDAVSFLIEFFSRLANALDSLHGVSPAMSAAAGGGEVAAEERSTDDRASAAENVFT

>peptide 3 (36 aa)
QPLAMDRALPRQQRCASTGAAASSSRCPCRRRRGLR*

Sequence

>CNT309319
CAGCCGCTAGCCATGGATCGGGCCTTGCCTCGCCAGCAGCGATGTGCAAGCACAGGTGCAGCAGCTAGTAGTAGCCGATGTCCTTGTCGTCGACGACGAG
GTCTCCGTTGATGAGCTCGCGGTAGGCCGCGACGGGCCAGATGAACCCCCTGGGGAGGAGGCGGGTGGCGAGCTCGACGTCGATGATGATCTCCCTCATG
GCGGGCTTCTTCTCGCCGCTGATGGCGATGAGGTAGCTCCTGCCGACCCACCCGATCCACCCGGCGATGTAGAGGAAGAGCAGGCCGAACTTGCCGTAGT
TCTCGAACCGCCGCTTGGTCTTCTCGATGGTGGCGTTGATGGCGAGGGCCGGGGCGCTGTCGGGCGCGTACTTCTTGAGCGACGCGGTGAGCTTCTTGAT
CGAGTTCTTCTCGCGCTTGGCGAACGCCTTGGACTCCTTGCACGGGGTCAGCCCCGCGATGTCAGCGGCCGCGGGGGGAGGGGAGGTGGCGGCCGAGGAG
AGAAGCACCGACGACAGAGCCAGCGCGGCCGAGAACGTCTTCACGG